Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70350 39 / 0.0001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013008 [exp] 79 / 9e-20 AT1G70350 59 / 3e-12 unknown protein Lus10030618 [exp] 55 / 1e-10 AT1G70350 62 / 1e-13 unknown protein
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029157 pacid=23151789 polypeptide=Lus10029157 locus=Lus10029157.g ID=Lus10029157.BGIv1.0 annot-version=v1.0 ATGGCGGCCAACGGAGCAAGTAGAGTCATCCAATGCTCTTCAACGAAGACCCTTTTTTCCGGCGCTAGCTCAGGCACACGAGGAGGATCAAGGTCTTCTC CGTTTGCTTCTAAAGCTTCCAGCTTTACTCCTGGCCTCTCCCCTTCTAAGCCCAGCTTCCCTTCGCTCTCCTTCCGTGGACCTACACTCTCCAGGTTACC TGTGGAGTTGGGCGGTGCGCTTAGCATGATGCCTTTGCATAGTGCAACTTCCTCTGCATTGTTCACTTCATTGCTATCCGTGCACAGTCAAAGCTGGGGT TGTCTATCAGAAGGTACTGTCTCCACATCTTGTTGCTCATCTATCATTGTGCTACATTAG
AA sequence Show only first row Show all	>Lus10029157 pacid=23151789 polypeptide=Lus10029157 locus=Lus10029157.g ID=Lus10029157.BGIv1.0 annot-version=v1.0 MAANGASRVIQCSSTKTLFSGASSGTRGGSRSSPFASKASSFTPGLSPSKPSFPSLSFRGPTLSRLPVELGGALSMMPLHSATSSALFTSLLSVHSQSWG CLSEGTVSTSCCSSIIVLH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70350			unknown protein		Lus10029157 [exp]	0	1
AT5G36950		DEGP10	DegP protease 10 (.1)		Lus10008727 [exp]	3.9	0.8700
AT3G50420			Pentatricopeptide repeat (PPR)...		Lus10022469 [exp]	6.0	0.8532
AT1G29220			transcriptional regulator fami...		Lus10029237 [exp]	6.6	0.8567
AT2G15430		NRPE3A, NRPD3, ...	DNA-directed RNA polymerase fa...		Lus10002823 [exp]	8.0	0.8790
AT2G27730			copper ion binding (.1)		Lus10020624 [exp]	12.8	0.8734
AT5G49555			FAD/NAD(P)-binding oxidoreduct...		Lus10024010 [exp]	13.0	0.8625
AT3G63510			FMN-linked oxidoreductases sup...		Lus10016407 [exp]	15.8	0.8665
AT3G52190		AtPHF1, PHF1	phosphate transporter traffic ...		Lus10038651 [exp]	21.2	0.8690
AT3G07180			GPI transamidase component PIG...		Lus10025916 [exp]	23.4	0.7778
AT5G61770		PPAN	PETER PAN-like protein (.1.2.3...		Lus10002672 [exp]	26.2	0.8507

Compare expression of checked genes

Lus10029157 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.