Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23790 418 / 2e-141 Plant protein of unknown function (DUF936) (.1) AT1G70340 392 / 2e-131 Plant protein of unknown function (DUF936) (.1) AT1G08760 164 / 2e-43 Plant protein of unknown function (DUF936) (.1) AT4G13370 155 / 2e-40 Plant protein of unknown function (DUF936) (.1) AT3G14170 147 / 2e-38 Plant protein of unknown function (DUF936) (.1) AT3G19610 123 / 2e-29 Plant protein of unknown function (DUF936) (.1) AT2G31920 100 / 4e-22 Plant protein of unknown function (DUF936) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013006 [exp] 572 / 0 AT1G23790 300 / 6e-97 Plant protein of unknown function (DUF936) (.1) Lus10030619 [exp] 465 / 2e-159 AT1G23790 393 / 5e-132 Plant protein of unknown function (DUF936) (.1) Lus10030870 [exp] 442 / 1e-150 AT1G23790 391 / 6e-131 Plant protein of unknown function (DUF936) (.1) Lus10013007 [exp] 339 / 1e-114 AT1G23790 253 / 6e-82 Plant protein of unknown function (DUF936) (.1) Lus10041407 [exp] 171 / 2e-49 AT1G23790 135 / 7e-37 Plant protein of unknown function (DUF936) (.1) Lus10026806 [exp] 170 / 4e-45 AT1G08760 732 / 0.0 Plant protein of unknown function (DUF936) (.1) Lus10036076 [exp] 170 / 1e-44 AT1G08760 731 / 0.0 Plant protein of unknown function (DUF936) (.1) Lus10008138 [exp] 144 / 2e-37 AT3G14170 350 / 8e-117 Plant protein of unknown function (DUF936) (.1) Lus10013177 [exp] 142 / 2e-36 AT3G14170 459 / 9e-158 Plant protein of unknown function (DUF936) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G192300 [exp] 511 / 1e-176 AT1G23790 572 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.010G038600 [exp] 292 / 7e-94 AT1G23790 285 / 1e-91 Plant protein of unknown function (DUF936) (.1) Potri.017G026200 [exp] 171 / 2e-45 AT1G08760 719 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.007G131600 [exp] 166 / 5e-44 AT1G08760 674 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.003G070200 [exp] 144 / 6e-37 AT3G14170 458 / 2e-157 Plant protein of unknown function (DUF936) (.1) Potri.018G072500 [exp] 144 / 2e-36 AT4G13370 719 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.001G294600 [exp] 131 / 4e-32 AT3G19610 177 / 2e-47 Plant protein of unknown function (DUF936) (.1) Potri.009G024800 [exp] 122 / 2e-29 AT2G31920 293 / 1e-91 Plant protein of unknown function (DUF936) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06075 [flax] [poplar] DUF936 Plant protein of unknown function (DUF936)
Representative CDS sequence Show only first row Show all	>Lus10029158 pacid=23151802 polypeptide=Lus10029158 locus=Lus10029158.g ID=Lus10029158.BGIv1.0 annot-version=v1.0 ATGGCTGCTCTGGCACCGGGAATCCTGTCCAAGCTCCTGGAAGCGATGAACACCGGAATCAAACCGACGAGCGAGCACCGGAGCTCGCTCCTCCAGGTAA CCGACATCGTCCCGGCTGATCTCGACGAGAAATCCCTCTTCCCCAAGCAAGGATTCTACATCAAAGTATCAGATTCCTCCCATTCCATCTACGTCTCCCT CCCTTCCGACCAGGACGACTTCGTCCTCAGCAACAAGATGCAGCTGGGTCAGTTCATCTACGTCGAGAGGTTGGAGCCAGGGTCCCCTGTTCCCGTCGTC AGGGGCGCCAAACCGCTCCCCGGCCGGCACCCGATGGTGGGCACGCCGGAGCCGTTGATGAGTTTGAGAGAGAAAGGGAACAGGAAAGTAGAGCTTGATT TCCCCGGGAGAGTTTCGGGGAATCGGAGAGGCTCGTGGGGGATCGGGAAAGGAAATGATGAAGATGATTGTTCGAGTCGGATTCGTTCGCCGATTGGAGG TGGGACGCTGTCGAAAATGGCGGAGAGTCCTTTATTGAGGAAGAGCTGTGCAGCTCCGTCTTCTTCTGCATCGAAGTTTCCGAGGAGTCGTAGCGTTTGC GGCGGCGATCGAGACTCCAGGATTCCGATTAGCCCATGTATCTCATCTGGTAAGAAAAGCTCCACTCCTCCACCGAGCTTGAGGAATAAGAAACCGCTGA AATTGGGGGACACAGAATTGCAGAACTTGGCTGGAAGTAATCCAGTCGCCGGCGATCCTGAAACCAGTCTTCCGTTCAATTTACCGGGAAAGCTGAGCAC GCTTGGGAAGGAAGCTATGCAGCAGAGGGAAACTGCACAAAAGATAGCACAGCAAGCATTAAGAGACGCTTCAGCTACTGAAACATTAGTTAGATCTCTC AAGATGTTCTCAAACTTGACCAAAACAGCAAGGCCAGAATCACCAGCATCCTGTTTCGACAAGTTCCTTGAATTCCACTCCCAAATCGGACAGGCTATCA ACGACATGCTCTCCATTCAAGCAGCGACAGCTACAAACTCCACAATAGAATCAGCTCAAATCCCGAAAAGAACCAAGCAAATGAATCCTGAGGAAGAGTT TCCGGTCCTGAACGAGCTCATCCAGAACCAATCCAAGAGCGCGGAATCCAAGAGAAGAACAGCCCTCTACAAGTCGATTGCTTCGTTCTCAAGCGAGCAA CAAAAGCTGCATTCTTCCAGCACAAGGCTCCTCAGATCGACCGCCAGGGCTAAAGCTATGCCATCGAGTCCGCTCGGGAAGCTGCAGCTTGAATCAGTTA GTGAGAATGATGAGAACAGGAAACCAACTAGTACTAGTACTACTACTACATTGTCCGGTACCGGTTTTTTTAGCACGATTAAGCTGGGGAAGGAGATTGA GGCGGAGGCGGGGAACTGGTTCATGGAGTTTGTGGAGAAGGCGTTGGAGGCCGGGATGATGAAGAGATCGTCTAGGAAGAATGATGTTAATGGAGATGAT GGTAAGAGGGTGGTGCCACAATCTGTTCTGCTGAAGGTGATTAACTGGGTGGAGGTTGAGCAATGTGATGGTAGTAAGAGGCGAGTTCATCCGAAAGCTG TTCAGGTTGCTAGGAGGTTAAGGATCAAGATGAAGAACCCTTAA
AA sequence Show only first row Show all	>Lus10029158 pacid=23151802 polypeptide=Lus10029158 locus=Lus10029158.g ID=Lus10029158.BGIv1.0 annot-version=v1.0 MAALAPGILSKLLEAMNTGIKPTSEHRSSLLQVTDIVPADLDEKSLFPKQGFYIKVSDSSHSIYVSLPSDQDDFVLSNKMQLGQFIYVERLEPGSPVPVV RGAKPLPGRHPMVGTPEPLMSLREKGNRKVELDFPGRVSGNRRGSWGIGKGNDEDDCSSRIRSPIGGGTLSKMAESPLLRKSCAAPSSSASKFPRSRSVC GGDRDSRIPISPCISSGKKSSTPPPSLRNKKPLKLGDTELQNLAGSNPVAGDPETSLPFNLPGKLSTLGKEAMQQRETAQKIAQQALRDASATETLVRSL KMFSNLTKTARPESPASCFDKFLEFHSQIGQAINDMLSIQAATATNSTIESAQIPKRTKQMNPEEEFPVLNELIQNQSKSAESKRRTALYKSIASFSSEQ QKLHSSSTRLLRSTARAKAMPSSPLGKLQLESVSENDENRKPTSTSTTTTLSGTGFFSTIKLGKEIEAEAGNWFMEFVEKALEAGMMKRSSRKNDVNGDD GKRVVPQSVLLKVINWVEVEQCDGSKRRVHPKAVQVARRLRIKMKNP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70340			Plant protein of unknown funct...		Lus10029158 [exp]	0	1
AT4G17000			unknown protein		Lus10010744 [exp]	3.5	0.9651
AT4G02800			unknown protein		Lus10014668 [exp]	5.5	0.9640
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Lus10003800 [exp]	5.7	0.9640
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Lus10027331 [exp]	6.5	0.9588
AT3G51740		IMK2	inflorescence meristem recepto...		Lus10002854 [exp]	7.6	0.9226
AT4G13370			Plant protein of unknown funct...		Lus10019398 [exp]	7.7	0.9631
AT5G01910			unknown protein		Lus10014179 [exp]	8.4	0.9557
AT5G50890			alpha/beta-Hydrolases superfam...		Lus10007331 [exp]	8.4	0.9180
AT4G32830		ATAUR1	ataurora1 (.1)		Lus10006033 [exp]	8.5	0.9619
AT3G15550			unknown protein		Lus10025757 [exp]	8.7	0.9627

Compare expression of checked genes

Lus10029158 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.