Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60230 468 / 3e-163 Radical SAM superfamily protein (.1) AT2G39670 125 / 7e-32 Radical SAM superfamily protein (.1.2) AT3G19630 122 / 6e-31 Radical SAM superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013005 [exp] 708 / 0 AT1G60230 582 / 0.0 Radical SAM superfamily protein (.1) Lus10000081 [exp] 317 / 5e-108 AT1G60230 332 / 9e-114 Radical SAM superfamily protein (.1) Lus10002698 [exp] 128 / 9e-33 AT2G39670 595 / 0.0 Radical SAM superfamily protein (.1.2) Lus10000953 [exp] 131 / 1e-32 AT2G39670 588 / 0.0 Radical SAM superfamily protein (.1.2) Lus10020989 [exp] 107 / 1e-25 AT3G19630 569 / 0.0 Radical SAM superfamily protein (.1) Lus10005409 [exp] 103 / 3e-24 AT3G19630 568 / 0.0 Radical SAM superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G040700 [exp] 519 / 0 AT1G60230 583 / 0.0 Radical SAM superfamily protein (.1) Potri.008G056500 [exp] 131 / 9e-34 AT2G39670 622 / 0.0 Radical SAM superfamily protein (.1.2) Potri.001G294900 [exp] 109 / 3e-26 AT3G19630 577 / 0.0 Radical SAM superfamily protein (.1) Potri.010G203300 [exp] 48 / 8e-06 AT2G39670 238 / 2e-75 Radical SAM superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029159 pacid=23151840 polypeptide=Lus10029159 locus=Lus10029159.g ID=Lus10029159.BGIv1.0 annot-version=v1.0 ATGGAGATGGGCTGTGTGTGGATGAGGCGAATCCGACTCGCCGCCGGACCCAACTCTATCTTTCTATTCAACCAATCTCCGTCAATCGTTTCATCCTCCA CTACCCTTTTAAATTGTATATCCTCGCCGCCGGCAACACCGTATAATCTCACCCTCAATTTCACTCCACGCCGCCGCTTCTTTTCAAAGGCGGCCTCCTC CCCATCGGCACATTCTATGGAAGAAGCCTCTCCTCACAGCTCCACTGGAATCGGCGACACTGAAGCTACTTCTCTGGATGAGGGCTCCAAGGTTCTGCTC AAGGAAATGAGATACTCTGAACTTGAAAAGTGGGTAAAGTCCCATGGGTTCAGACCTGGTCAAGCTATGATGCTGTGGAAGCGTTTGTATGGCTTGAATA ACATCTGGGCACAGTATGTTGATGAATTGGAAGGTTTGAACAAAGACTTCAAGAAGATGCTGAGCGAACAAGCTCTGTTCCAGTCTCTGACCTTGCAAGA AGTTGTGACTGCATTTGATGGAACTAGAAAGATTTTATTCATGTTGAACGATGGACTTGTTATAGAAACAGTAGTGATACCATGTGATAGGGGTAGGACC ACAGTATGTGTCTCGAGTCAGGTCGGCTGCGCCATGAATTGCCAGATGGGTTTGACTAGACATTTGACGACAGCCGAGATAGTCGAGCAAGCTGTATTTG CAAGGAGATTGCTCACGAGTGAAGTTGGTTCCATCACAAATGTCGTCTTCATGGTATGTATAGTTCCACCATTGTTCCGGAAAACTGTGTATATACATAG TATCTGTATTCACCGCCCCACCCGTGCAAAAAAACAGCATGGTGCATTGGCTGTCAGTCTCAACGCAACGACTGATGAGGTCAGAAACTGGATCATGCCA ATCAACCGGAAATACAACATCAGCTTGCTTCTCGAAACCCTGCGAGAGGAGCTTCAATCCAGGAACAACTACAAAGTGCTGTTCGAATATGTAATGCTAG CCGGAGTAAATGACAGCTTGGATGATGCAAGGAGACTCATCGATCTCGTAAAGGGAATTCCGTGCAAGGTGAACCTCATTCAGTTCAACCCGCACTGTGG ATCCCCGTTCAAGCCGACCGGCATAGACCGTATGATCGAGTTCCGCAACACGCTTGCAGCAGGGAAATGTGCTGCGTTTCTGAGGGAGAGCAGAGGTGAC GATCAAATGGCCGCTTGTGGCCAGCTGGGGAAACTTGGGACGATCCAAGCTCCTAGGCTTAGAGTTCCCGAACAATTCAAGGTTGTTGTAAATGGTTAG
AA sequence Show only first row Show all	>Lus10029159 pacid=23151840 polypeptide=Lus10029159 locus=Lus10029159.g ID=Lus10029159.BGIv1.0 annot-version=v1.0 MEMGCVWMRRIRLAAGPNSIFLFNQSPSIVSSSTTLLNCISSPPATPYNLTLNFTPRRRFFSKAASSPSAHSMEEASPHSSTGIGDTEATSLDEGSKVLL KEMRYSELEKWVKSHGFRPGQAMMLWKRLYGLNNIWAQYVDELEGLNKDFKKMLSEQALFQSLTLQEVVTAFDGTRKILFMLNDGLVIETVVIPCDRGRT TVCVSSQVGCAMNCQMGLTRHLTTAEIVEQAVFARRLLTSEVGSITNVVFMVCIVPPLFRKTVYIHSICIHRPTRAKKQHGALAVSLNATTDEVRNWIMP INRKYNISLLLETLREELQSRNNYKVLFEYVMLAGVNDSLDDARRLIDLVKGIPCKVNLIQFNPHCGSPFKPTGIDRMIEFRNTLAAGKCAAFLRESRGD DQMAACGQLGKLGTIQAPRLRVPEQFKVVVNG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60230			Radical SAM superfamily protei...		Lus10029159 [exp]	0	1
AT1G60230			Radical SAM superfamily protei...		Lus10000081 [exp]	1.4	0.9361
AT5G58260		NdhN	NADH dehydrogenase-like comple...		Lus10019123 [exp]	3.5	0.8953
AT2G21370		XK1, XK-1	XYLULOSE KINASE 1, xylulose ki...		Lus10041956 [exp]	4.2	0.9311
AT5G27290			unknown protein		Lus10018966 [exp]	6.3	0.9237
AT5G19500			Tryptophan/tyrosine permease (...		Lus10036099 [exp]	7.3	0.8997
AT1G54680			unknown protein		Lus10033821 [exp]	7.5	0.9018
AT1G54680			unknown protein		Lus10018965 [exp]	8.4	0.9137
AT4G12830			alpha/beta-Hydrolases superfam...		Lus10002142 [exp]	8.5	0.9274
AT1G53250			unknown protein		Lus10042840 [exp]	9.2	0.8921
AT2G01870			unknown protein		Lus10009946 [exp]	9.8	0.9143

Compare expression of checked genes

Lus10029159 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.