Plant FIBer expression Database

Lus10029160 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G40270 623 / 0 HD domain-containing metal-dependent phosphohydrolase family protein (.1)
AT5G40290 558 / 0 HD domain-containing metal-dependent phosphohydrolase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013004
[exp]
798 / 0 AT5G40270 469 / 8e-163 HD domain-containing metal-dependent phosphohydrolase family protein (.1)
Lus10022228
[exp]
542 / 0 AT5G40270 665 / 0.0 HD domain-containing metal-dependent phosphohydrolase family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G190200
[exp]
634 / 0 AT5G40270 615 / 0.0 HD domain-containing metal-dependent phosphohydrolase family protein (.1)
Potri.009G147800
[exp]
606 / 0 AT5G40270 685 / 0.0 HD domain-containing metal-dependent phosphohydrolase family protein (.1)
Potri.009G147750
[exp]
51 / 1e-07 AT5G40270 60 / 3e-11 HD domain-containing metal-dependent phosphohydrolase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0237 HD_PDEase PF01966 HD HD domain
Representative CDS sequence
>Lus10029160 pacid=23151698 polypeptide=Lus10029160 locus=Lus10029160.g ID=Lus10029160.BGIv1.0 annot-version=v1.0
ATGCAATTTCCGATTCCTCTGCAGAGTTGGACAATGGGAGCTTCCATCAACGACGGTTCCAGCGCCTCGAACTTCGCTCCTTACTGGCAGGATCGAAGGT
CATCGAAGCAGGTCCTCGATAATGTACATGGATACATATATTTGGACCCGCTCGCTCTGAAGTTCGTTGATACTGAACAGTTTCAGAGGCAAGTTCAACT
TAGTAGTACTGCACGACTAACCAATATGGTTTACCCTGGAGCAGTGCACTCTCGGTTTGAGCACTCTTTAGGTGTATACCATCTTGCTGGGGAAGCAGCT
TATCGTATCCGAGCTCAGCAGGATGCTGACTGTTGTGTGGAGGATTTTGATATCCAGACTGTGAAACTTGCTGGACTATTGCATGATATTGGCCATGGAC
CATTCAGTCACATGTTTGAGAGTGGATTTCTGCCGCAGTTTCTTAATGGCTCCAAATGGTCCCATGAAGACATGTCTATCAAGATGATAGACTACATTGT
TGACAAACACCACATAGACATTGATCCGGACTGCTTAAAGCAAGCAAAGGAAATGGTCATTGCAAGTACTGAACATGCTCAACACAATAATCCCTCTGGA
AAAAAGTTCTTATATGACATTGTTGCCAACGGTAGAAACGGAATAGATGTGGACAAGTTTGACTACCTTGCTCGTGATAAGAGGGCTTGCGGGCTTGGCA
ACAGTTTTATGTTTCAGAGGTTAATGGAATCCATGAGGGTTCTTGGAGATGAGATATGTTACCGTTACAGCGATTATCTAACGGTCTACAAGCTGTTTTC
AACTCGTGCAGAAATGCACCGCACGGTCTACACTCATGCTAAAGTGAAGGGGATAGAACTTATGGCTATCGATGCCCTGTCAAAAGCAAATGACACCCTT
AAAATTTCCGAGTCAGTTCAGGATCCTGGAGAATTTTGGAAGATAGATGACTCGATTTTGAAGAGAATTGAAGTTGATGAACGTCCAGAACTCAAAGAGG
CCAGAGAACTGGTCCTGCGCATTAGGAGAAGAGATATATACCAGTTCTGCAATCAGTTTTCTGTTCCTAAAGACAAGCTACACCACTTTAAGGACGTCAC
TCCACAGGAAATTATTTGCTCTCAGAACTCTACGGATATTACATTGAAAGAAGAAGACATTGCTGTGACCACTATTAAGATCGACTTGACCCGTGGAATG
TTCAATCCTCTCGAGAAGTATGTGAAAATGGCGTTCTTCCTTTCGTCTGCTTGCTTCGTTACCTTCGAATTTACTTCTTCTCACTTGTTTCTGATATTTT
CCTTGTGCATCTCCACATCTACTAGCATCAAGTTTTTCCAGGACTACTCAAGCAAGGATAAGTTCAATATACCTACAGACCGCATCAGCCACTTGGTTCC
TGTTGTATGCCAAGACAAGCTCGTGAGAGTGTACGCAAAGAAGCCTGAACTGGTGGAGGCAGTTTCTCAGGCCTTTGAGAACTTTCAGATGAAAACATAT
GGCATGAAAGCACAGGTATGTGCCACTCCTGAGAAGAAGAAGAACCGCAAAAGGTTGTACCCTTACTGA
AA sequence
>Lus10029160 pacid=23151698 polypeptide=Lus10029160 locus=Lus10029160.g ID=Lus10029160.BGIv1.0 annot-version=v1.0
MQFPIPLQSWTMGASINDGSSASNFAPYWQDRRSSKQVLDNVHGYIYLDPLALKFVDTEQFQRQVQLSSTARLTNMVYPGAVHSRFEHSLGVYHLAGEAA
YRIRAQQDADCCVEDFDIQTVKLAGLLHDIGHGPFSHMFESGFLPQFLNGSKWSHEDMSIKMIDYIVDKHHIDIDPDCLKQAKEMVIASTEHAQHNNPSG
KKFLYDIVANGRNGIDVDKFDYLARDKRACGLGNSFMFQRLMESMRVLGDEICYRYSDYLTVYKLFSTRAEMHRTVYTHAKVKGIELMAIDALSKANDTL
KISESVQDPGEFWKIDDSILKRIEVDERPELKEARELVLRIRRRDIYQFCNQFSVPKDKLHHFKDVTPQEIICSQNSTDITLKEEDIAVTTIKIDLTRGM
FNPLEKYVKMAFFLSSACFVTFEFTSSHLFLIFSLCISTSTSIKFFQDYSSKDKFNIPTDRISHLVPVVCQDKLVRVYAKKPELVEAVSQAFENFQMKTY
GMKAQVCATPEKKKNRKRLYPY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G40270 HD domain-containing metal-dep... Lus10029160
[exp]
0 1
AT1G06130 GLX2-4 glyoxalase 2-4 (.1.2) Lus10039860
[exp]
1.4 0.8804
AT5G40270 HD domain-containing metal-dep... Lus10013004
[exp]
1.7 0.8651
AT4G35270 NLP2 Plant regulator RWP-RK family ... Lus10023930
[exp]
2.0 0.8803
AT4G01370 ATMPK4 MAP kinase 4 (.1) Lus10032295
[exp]
5.3 0.8638
AT4G33470 HDA14, ATHDA14 histone deacetylase 14 (.1) Lus10012713
[exp]
7.7 0.8310
AT1G22260 AtZYP1a, ZYP1a Myosin heavy chain-related pro... Lus10032798
[exp]
8.4 0.8355
AT4G33470 HDA14, ATHDA14 histone deacetylase 14 (.1) Lus10010889
[exp]
9.9 0.8355
AT2G28260 ATCNGC15 cyclic nucleotide-gated channe... Lus10037394
[exp]
10.2 0.8137
AT3G51880 AtHMGB1, NFD1, ... NUCLEOSOME/CHROMATIN ASSEMBLY ... Lus10040192
[exp]
11.5 0.8320
AT3G04890 Uncharacterized conserved prot... Lus10015938
[exp]
17.2 0.8369

Lus10029160 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.