Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60200 553 / 0 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein (.1) AT2G43370 53 / 6e-07 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G71800 49 / 1e-05 CSTF64 cleavage stimulating factor 64 (.1) AT4G34110 47 / 0.0001 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013003 [exp] 1244 / 0 AT1G60200 638 / 0.0 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein (.1) Lus10030866 [exp] 405 / 9e-126 AT1G60200 593 / 0.0 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein (.1) Lus10030623 [exp] 393 / 4e-122 AT1G60200 558 / 0.0 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein (.1) Lus10028714 [exp] 54 / 5e-07 AT1G71800 308 / 1e-100 cleavage stimulating factor 64 (.1) Lus10014814 [exp] 54 / 6e-07 AT1G71800 350 / 2e-116 cleavage stimulating factor 64 (.1) Lus10017923 [exp] 53 / 1e-06 AT1G71800 306 / 4e-98 cleavage stimulating factor 64 (.1) Lus10025557 [exp] 48 / 3e-05 AT2G43370 345 / 1e-118 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10030482 [exp] 47 / 5e-05 AT3G11400 459 / 9e-165 eukaryotic translation initiation factor 3G1 (.1.2) Lus10027015 [exp] 47 / 6e-05 AT2G43370 347 / 3e-119 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G147100 [exp] 734 / 0 AT1G60200 323 / 1e-96 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein (.1) Potri.010G094700 [exp] 702 / 0 AT1G60200 320 / 4e-95 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein (.1) Potri.002G061200 [exp] 50 / 6e-06 AT1G71800 354 / 3e-117 cleavage stimulating factor 64 (.1) Potri.017G033400 [exp] 47 / 5e-05 AT2G43370 341 / 8e-117 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G244600 [exp] 45 / 0.0003 AT2G29210 253 / 1e-71 splicing factor PWI domain-containing protein (.1) Potri.003G107200 [exp] 44 / 0.0006 AT5G51300 830 / 0.0 splicing factor-related (.1.2.3) Potri.016G090700 [exp] 42 / 0.0009 AT2G37220 302 / 4e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.009G036900 [exp] 44 / 0.001 AT2G29210 263 / 6e-75 splicing factor PWI domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01480 [flax] [poplar] PWI PWI domain CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10029161 pacid=23151649 polypeptide=Lus10029161 locus=Lus10029161.g ID=Lus10029161.BGIv1.0 annot-version=v1.0 ATGGCCGAACCTACTTCTTCCTCCACTACGCCAGCGGCGCCGCCGGACTCCAATCCAACGCCGATGGCCACCGATAACGTCGCCACTCAGTTAGATCCAG CTTCCGCTTCCTCCCTGGCGCCAAATCACCAACCGCAATCTTCCGTTCCTCCCCCGCCCAACCCTAGCCTCACCCCCGGTCCTACGAACAACATCGCCGG CACTCCATCAGCGTTTCCTTCCACCTACGGTCTTCCTCCGCCGCCTCCGATGTACGGGGCGCCGTTGCAGCCCTCGTTTCGTCCGGTTGCGCAGTTCACT ACGCTTCAGAATTACCAGAACGCTGTCGGTGTTCAGCCTCCAGGAGTGGGAGGAGCAGGTACGGCCACCGCGAATACCGCTCCGCCTGGGATGCCTCATT ATCAGGTCCAACCTGGTCAGTATCCGAATCCGATCCTAAGACCGCCGTATGCTTCTTTCCCGAATGGCTATCCCGGAGCTACTCCTCAAGGGATCATGCC CCCTCCTGGAATCCCTCGTTTTCCGTCACACTTCCCAGGGATGATTCGTCCCAGCTTTCATCCACGTCCACCTGGCGCACCGGGTTTACTTCCAATGGCT CGTCCTATGGTTCCAAATATTCCAGGTGTTCGCCCCTTTATCCCTCCAATTATTAGACCAGCTGTACCTTCTGTGACACCAGCGGAGAAGCCCCAGACTA CAGTATACGTAGGCAAGATATCGCCCAGTGTGAAGAATGACTTCATGCTCCCTCTTCTTCAGTCTTGTGGACTTGTTAAGAGCTGGAAACGTGCAGAAGA CCCTTCTGACGGGACTCCTAGAGGTTTTGGATTCTGCGAATTTGAAAATGCTGAAGGGATTCTCCGTGCATTACGTCTGCTCAGTAAATTTAATATTGAT GGGCAGGAACTCGTGTTAAATGTGAATCAAGCGACAAGAGAATATCTAGATCGGTATGTCGAAAAGAAAACTGAGAATTCCAAGAATCTGAAAGAAGGGG CAGCAGACAAACAGGATACTGCTCCAACTGATGCTGAGTCATCTGAAAAGACTGAACCTGCAAAATCATCGGCAGATGATTCAGAAAATGATGATGGAAA AGACGATAAAGCCAGTCATGACCTTGCTAAGTTTGGCATTGTAACTGATGAAGATAAAGAAGGTGACAGGGCAGCAATGGAGAAGATCACTGACATGATA GAAGAAAGGATTAAAACAAGACCCTTGCCGCCTCCTCCTCCCCCTCCTCCGCTACTTCCTACGGACGGTTCTTTCAATCCGCATATCGAGCAAATCAAAT CACAGGATGGCGACTCGGACATCGATGGAACGAGAAATGATGCATCCGAGGAAAAAAATAACGACGAGACGAGTAGTGAGTACAAGGCAGCGATTGAACA TGATCGATCCGAGGTTACCTCCCCTGACAGGAACAGAAGGTATGATAGAAGGAGCAGAGATGTTAAGCACGAAAAGGAACGAGAGATGGAAAGATACGAG AGGGAAGCGGAACGAGAAAGAGTTAGGAAGGAAAGGGAACAACGGAGGAAGGTGGACGATGCTGAGCGTGAGTACGAAGAACGACTAAGAGATTGGGAAT ATAGAGAGCGGGAGAAAGAGAAACAACGTCAGTATGAGAAAGAAAAGGAGAAAGAAAGAGAACGCAAGCGGAGGAAGGAGATACTTCGGGATGAAGAAGA TAAAGCCGATGAAGAATCTGGGAAAAGATGGCGAAGGAGTGTTATAGAGGAGAAGAGAAGAAAAAGACGACAAGAGAAGGAAGATGATTTGGCTGACAAG GTCAAAGAAGAGGAAGAAATTGCTGAAGCCGAGAAGAGAGCCAAAGAGGAAAAACTGCTGCAGGAAGAAAAAGAGGTACTGAAAGTTCCATCTCCCACCG AGCTCGCAAATGGCAGTGACAAGGCTGCTTCGCCTGATGAAATGGTTATTGAACGGGGTGAAGATGTCGACTCTGTTGATGCAAATCACACAGGTGATGA GAGGATACAGAACGGTGCTGATGTGGCATTATCTGTAACAACGGTTGACTCAGAAGCACATCAGGAGAATGCTAATGCTCCGACGAGAAAATTAGGGTTT GGCTTACTCGGGGCAGGAAAACGTGCTAATGTGCCATCGGTTTTCCATGAAGAGGAGGATGATGCTCACAAGGATAAAAAAATGAGGCCTCTAGTTCCCA TAGATTACTCAACAGAGGAATTGGAGGCTGTTCAACCTGTTACTACTTCCGGAACTCAACCGGCAAATCTGGTCGCTGCTGCGGAATATGCTAAACAGAT ATCTAATATTGCTCCCAGGGAAGAGAGATCAGAAGGTGAAAGGGATAATAAAAGGCAACGTTCTCATGACAGGCCAGGTCGTCGTGACGAGAATAGTAAT CGGTCCAGAGAAGATAGCAGAAAGAAGAGTGATCGTGAACGGGACAGGGACCGAGATCACGATTTGGATAAGGTGAAAACCCCGGATAAACAGAAGCTAT TGGATGCAAAACAGTTGATCGATATGATCCCCAAGACTAAAGATGAGTTGTTCTCGTACGAGGTTAACTGGGCCGTTTATGACAAGCACGCTCTACATGA TCGAATGAGACCTTGGATTTCCAAGAAGGTGACCGAGTTTTTGGGAGAGGAGGAAACAACACTAGTGGATTACATTGTGTCGAGTACCAAAGAACACGTG AAAGCTGCACAAATGCTGGAGATGCTCCAATCGATACTAGACGATGAAGCCGAGATGTTTGTGCTTAAAATGTGGAGGATGCTTATTTTCGAGGTTAAGA AGGTCGAGACAGGACTAGCTTTGAAGTCTAAATAG
AA sequence Show only first row Show all	>Lus10029161 pacid=23151649 polypeptide=Lus10029161 locus=Lus10029161.g ID=Lus10029161.BGIv1.0 annot-version=v1.0 MAEPTSSSTTPAAPPDSNPTPMATDNVATQLDPASASSLAPNHQPQSSVPPPPNPSLTPGPTNNIAGTPSAFPSTYGLPPPPPMYGAPLQPSFRPVAQFT TLQNYQNAVGVQPPGVGGAGTATANTAPPGMPHYQVQPGQYPNPILRPPYASFPNGYPGATPQGIMPPPGIPRFPSHFPGMIRPSFHPRPPGAPGLLPMA RPMVPNIPGVRPFIPPIIRPAVPSVTPAEKPQTTVYVGKISPSVKNDFMLPLLQSCGLVKSWKRAEDPSDGTPRGFGFCEFENAEGILRALRLLSKFNID GQELVLNVNQATREYLDRYVEKKTENSKNLKEGAADKQDTAPTDAESSEKTEPAKSSADDSENDDGKDDKASHDLAKFGIVTDEDKEGDRAAMEKITDMI EERIKTRPLPPPPPPPPLLPTDGSFNPHIEQIKSQDGDSDIDGTRNDASEEKNNDETSSEYKAAIEHDRSEVTSPDRNRRYDRRSRDVKHEKEREMERYE REAERERVRKEREQRRKVDDAEREYEERLRDWEYREREKEKQRQYEKEKEKERERKRRKEILRDEEDKADEESGKRWRRSVIEEKRRKRRQEKEDDLADK VKEEEEIAEAEKRAKEEKLLQEEKEVLKVPSPTELANGSDKAASPDEMVIERGEDVDSVDANHTGDERIQNGADVALSVTTVDSEAHQENANAPTRKLGF GLLGAGKRANVPSVFHEEEDDAHKDKKMRPLVPIDYSTEELEAVQPVTTSGTQPANLVAAAEYAKQISNIAPREERSEGERDNKRQRSHDRPGRRDENSN RSREDSRKKSDRERDRDRDHDLDKVKTPDKQKLLDAKQLIDMIPKTKDELFSYEVNWAVYDKHALHDRMRPWISKKVTEFLGEEETTLVDYIVSSTKEHV KAAQMLEMLQSILDDEAEMFVLKMWRMLIFEVKKVETGLALKSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60200			splicing factor PWI domain-con...		Lus10029161 [exp]	0	1
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Lus10018659 [exp]	2.0	0.8954
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Lus10007723 [exp]	2.0	0.8882
AT1G60900			U2 snRNP auxilliary factor, la...		Lus10037299 [exp]	5.0	0.8797
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10004022 [exp]	6.3	0.8879
AT2G26460		SMU2	SUPPRESSORS OF MEC-8 AND UNC-5...		Lus10039918 [exp]	6.9	0.8778
AT2G36010	E2F_DP	ATE2FA, E2F3	E2F transcription factor 3 (.1...		Lus10021298 [exp]	14.3	0.8279
AT2G43650		EMB2777	EMBRYO DEFECTIVE 2777, Sas10/U...		Lus10027922 [exp]	14.5	0.8881
AT5G08450			unknown protein		Lus10019217 [exp]	14.7	0.8785
AT1G04780			Ankyrin repeat family protein ...		Lus10000752 [exp]	15.8	0.8740
AT5G24670		TAD3, EMB2820	tRNA adenosine deaminase 3, EM...		Lus10016480 [exp]	16.7	0.8207

Compare expression of checked genes

Lus10029161 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.