Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70330 527 / 0 "ENT1,AT", ENT1,AT, ATENT1 equilibrative nucleotide transporter 1 (.1) AT1G02630 358 / 2e-121 Nucleoside transporter family protein (.1.2) AT4G05120 164 / 4e-46 FUR1, ENT3, FLUOROURIDINEINSENSITIVE1, ATENT3 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) AT4G05110 160 / 1e-44 ATENT6 equilibrative nucleoside transporter 6 (.1) AT4G05130 157 / 1e-43 ATENT4 equilibrative nucleoside transporter 4 (.1) AT3G09990 153 / 6e-42 Nucleoside transporter family protein (.1) AT4G05140 142 / 7e-38 Nucleoside transporter family protein (.1) AT1G61630 142 / 9e-38 ATENT7 equilibrative nucleoside transporter 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013002 [exp] 762 / 0 AT1G70330 534 / 0.0 equilibrative nucleotide transporter 1 (.1) Lus10030104 [exp] 365 / 6e-124 AT1G02630 526 / 0.0 Nucleoside transporter family protein (.1.2) Lus10018523 [exp] 169 / 1e-47 AT4G05120 579 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10039741 [exp] 168 / 1e-47 AT4G05120 580 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10018413 [exp] 164 / 1e-45 AT4G05120 606 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10002589 [exp] 162 / 3e-45 AT4G05120 609 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10018414 [exp] 134 / 2e-34 AT4G05120 548 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10020079 [exp] 115 / 2e-28 AT4G05120 392 / 7e-135 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10002167 [exp] 79 / 2e-18 AT1G02630 95 / 3e-25 Nucleoside transporter family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G058900 [exp] 590 / 0 AT1G70330 530 / 0.0 equilibrative nucleotide transporter 1 (.1) Potri.018G130000 [exp] 352 / 8e-119 AT1G02630 452 / 5e-159 Nucleoside transporter family protein (.1.2) Potri.006G068100 [exp] 334 / 8e-112 AT1G02630 432 / 6e-151 Nucleoside transporter family protein (.1.2) Potri.018G130200 [exp] 185 / 7e-57 AT1G02630 212 / 5e-68 Nucleoside transporter family protein (.1.2) Potri.019G118400 [exp] 152 / 1e-41 AT4G05120 520 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Potri.004G032400 [exp] 150 / 6e-41 AT4G05120 584 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Potri.004G032300 [exp] 139 / 9e-37 AT4G05120 586 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Potri.004G032500 [exp] 138 / 1e-36 AT4G05120 457 / 2e-160 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Potri.011G041112 [exp] 117 / 1e-28 AT4G05120 540 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF01733 [flax] [poplar] Nucleoside_tran Nucleoside transporter
Representative CDS sequence Show only first row Show all	>Lus10029162 pacid=23151764 polypeptide=Lus10029162 locus=Lus10029162.g ID=Lus10029162.BGIv1.0 annot-version=v1.0 ATGGGTATCTCCAGCCAACCGGAACCCGACACCGAATCCGCCCTCCTCCTCTCCACCACCGACAACCGATCAGCGGCGATCGCCTCCAAATCCGCCGCCC CCGCAGATAAATTCCACTTCGCCTACATAATCCACTTCACCCTCGGCGTCGGATTCCTCCTCCCATGGAACGCCTTCATCACCGCGGTGGACTACTTCTC CTACATCTACCCGGACGTCTCCGTCGACCGGATCTTCGCCGTCGCCTACTTCCTTTGCGGCCTCTTCTCCCTCATCGTCATCGTCTTCTACGCCCACAAG TCCGACGCCTACCTAAGGATTAATGCGGGACTGGTCCTCTTCGTCGCCGCTTTGCTGCTTGTCCCCGTGATGGACGGCGGGTTTATAATGGGCCGGGTCG GGTTGTACGGCGGATTTTATGTTACAGTCGGGGCGCTGGGTGTGTGTGGGTTGGCGGATGCTTTGGTCCAAGGTGGGCTTATCGGTGCTGCTGGGGAGTT GCCTGAGCGGTATATGCAGGCTATCATTGCTGGCACTGCTGGCTCTGGGGTGCTGGTTTCATTTCTAAGAATCTTTACAAAAGCTATGTACTCCCAAGAT TCGACCGGGCTAAGAAACAGCGCAAACCTCTACTTCATCGCCGGGATCGTAGTTATGGCGATCTGCATAGTCTTCTACAACGTAGCACACAGGCTCCCGG TCATGCAGTACTATGCTGATGCAAAAATCAACGCTATAAACGACGAAATACAAGACAAGGGCTCGATCACCGGAGCCGAATGGAGATCGAGCTTGTTAGG GATCGTGGGGAGTGTCAAATGGCACGGGATCGGGATGATCCTCATCTACCTTGTCACCTTGGCCATCTTTCCCGGCTACGTTACGGAGGATGTGAAATCC GAAGCCCTGAAGGATTGGTATCCGATTCTACTTTTAAGTAGCTACAACGTGTTTGATCTAGTTGGCAAGTCGCTGACTGCTGTGTACTTGCTCGAGAATT CGAAGGTTGTGATCGGTGCTTGCTTTGCGAGGCTGATGTTTTTCCCTCTATTCCTGGCTTGCTTGCACGGGCCGGAATTTTTCAGGACCGAGATCCCCGT AACAGTGCTGACTTGCCTCTTGGGACTTACCAACGGGTACTTGACGAGCGTGCTGATGATTTTGGCACCAAAGTCGGTTCCTTTGCATCAAGCTGAGACT GCCGGGATCGTCATGGTGCTTTTCCTCACTCTCGGCCTTGCCTCGGGATCCATCGTAGCCTGGTTTTGGGTTGTTTGA
AA sequence Show only first row Show all	>Lus10029162 pacid=23151764 polypeptide=Lus10029162 locus=Lus10029162.g ID=Lus10029162.BGIv1.0 annot-version=v1.0 MGISSQPEPDTESALLLSTTDNRSAAIASKSAAPADKFHFAYIIHFTLGVGFLLPWNAFITAVDYFSYIYPDVSVDRIFAVAYFLCGLFSLIVIVFYAHK SDAYLRINAGLVLFVAALLLVPVMDGGFIMGRVGLYGGFYVTVGALGVCGLADALVQGGLIGAAGELPERYMQAIIAGTAGSGVLVSFLRIFTKAMYSQD STGLRNSANLYFIAGIVVMAICIVFYNVAHRLPVMQYYADAKINAINDEIQDKGSITGAEWRSSLLGIVGSVKWHGIGMILIYLVTLAIFPGYVTEDVKS EALKDWYPILLLSSYNVFDLVGKSLTAVYLLENSKVVIGACFARLMFFPLFLACLHGPEFFRTEIPVTVLTCLLGLTNGYLTSVLMILAPKSVPLHQAET AGIVMVLFLTLGLASGSIVAWFWVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70330		"ENT1,AT", ENT1...	equilibrative nucleotide trans...		Lus10029162 [exp]	0	1
AT4G17440			Protein of unknown function (D...		Lus10004378 [exp]	1.7	0.8834
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Lus10023182 [exp]	2.4	0.8860
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10032223 [exp]	3.5	0.8854
AT5G41600		RTNLB4, BTI3	Reticulan like protein B4, VIR...		Lus10038833 [exp]	4.9	0.8496
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10022225 [exp]	6.0	0.8802
AT1G16840			unknown protein		Lus10035733 [exp]	7.2	0.8385
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10041353 [exp]	7.4	0.8538
AT2G39290		PGP1, PGS1, PGP...	phosphatidylglycerolphosphate ...		Lus10023471 [exp]	8.0	0.8339
AT3G10300			Calcium-binding EF-hand family...		Lus10042037 [exp]	8.2	0.8334
AT5G20650		COPT5	copper transporter 5 (.1)		Lus10022671 [exp]	8.9	0.8444

Compare expression of checked genes

Lus10029162 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.