Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10550 386 / 1e-135 XTH33, XET xyloglucan:xyloglucosyl transferase 33 (.1) AT2G01850 263 / 1e-86 ATXTH27, EXGT-A3 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1) AT1G14720 261 / 4e-86 ATXTH28, EXGT-A2, XTR2 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) AT1G32170 229 / 2e-73 XTH30, XTR4 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) AT4G18990 223 / 7e-71 XTH29, XTR13 xyloglucan endotransglucosylase/hydrolase 29 (.1) AT3G44990 202 / 2e-63 AtXTH31, XTH31, ATXTR8, XTR8 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, xyloglucan endo-transglycosylase-related 8 (.1) AT4G13090 197 / 1e-61 XTH2 xyloglucan endotransglucosylase/hydrolase 2 (.1) AT2G36870 196 / 7e-61 XTH32 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) AT3G25050 194 / 3e-60 XTH3 xyloglucan endotransglucosylase/hydrolase 3 (.1) AT5G65730 193 / 6e-60 XTH6, XTR10 xyloglucan endotransglucosylase/hydrolase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013000 [exp] 549 / 0 AT1G10550 397 / 9e-140 xyloglucan:xyloglucosyl transferase 33 (.1) Lus10029000 [exp] 261 / 1e-85 AT1G14720 457 / 1e-162 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Lus10013240 [exp] 252 / 2e-82 AT2G01850 456 / 2e-162 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1) Lus10030760 [exp] 251 / 5e-82 AT1G14720 456 / 3e-162 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Lus10010427 [exp] 231 / 1e-73 AT1G32170 462 / 5e-164 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Lus10026535 [exp] 209 / 4e-66 AT2G36870 444 / 9e-159 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10013822 [exp] 208 / 1e-65 AT2G36870 444 / 1e-158 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10041341 [exp] 204 / 4e-64 AT2G36870 421 / 2e-149 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10016144 [exp] 204 / 7e-64 AT2G36870 416 / 1e-147 xyloglucan endotransglucosylase/hydrolase 32 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G115000 [exp] 402 / 1e-141 AT1G10550 367 / 9e-128 xyloglucan:xyloglucosyl transferase 33 (.1) Potri.008G138400 [exp] 267 / 3e-88 AT1G14720 467 / 2e-166 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Potri.010G102300 [exp] 266 / 1e-87 AT1G14720 470 / 7e-168 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Potri.001G136100 [exp] 244 / 5e-79 AT1G32170 469 / 6e-167 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Potri.003G097300 [exp] 243 / 1e-78 AT1G32170 436 / 8e-154 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Potri.009G163850 [exp] 231 / 9e-75 AT2G01850 319 / 6e-109 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1) Potri.009G006600 [exp] 202 / 2e-63 AT3G44990 407 / 3e-144 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, xyloglucan endo-transglycosylase-related 8 (.1) Potri.016G098600 [exp] 199 / 3e-62 AT2G36870 477 / 1e-171 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Potri.006G122900 [exp] 197 / 1e-61 AT2G36870 478 / 4e-172 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Potri.002G244200 [exp] 192 / 1e-59 AT4G13090 321 / 3e-110 xyloglucan endotransglucosylase/hydrolase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [flax] [poplar] Concanavalin PF06955 [flax] [poplar] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Lus10029165 pacid=23151654 polypeptide=Lus10029165 locus=Lus10029165.g ID=Lus10029165.BGIv1.0 annot-version=v1.0 ATGCTCTGCCCACTCTTCCCACTACTGTATCTCCTGCTTCTTACAGCATCAGGAGTTTCTTCACGCAACACCCCTTATACCCCTCCAAACGTCAAACGTT TGACTGATCTCTTTGGTCCCTTGACCATTAACCAAGGTTTCAACACTTACTATGGCGGCCAACATGTTAAGCAGTTCAACAATGGGTCCTTTGCCACTCT TTCTCTGGACAAGGCTTCAGGAGCTGGGTTGGCATCGACGAACAAATACTTATATGGGTTCTTCAGTGCTGCAATAAAGTTGCCTTCTGGTCTGTCACCT GGAGTTGTGGTAGCCTTCTATTTGTCTAATGCAGAAACTTACCCTCACAACCACGACGAGATTGATTTCGAGATACTTGGACACGACAGGAAGAACGACT GGAACTTGCAGACGAATGTGTACGCAAATGGGAGTGTGAGCACTGGCAGGGAAGAGAAGTTTAACTTCTGGTTTGACCCTACTCAGGACTACCACAACTA CAGCATCATTTGGAACAGCCACCATATAGTGTTTCTGGTGGATAGTGTACCAGTGAGGGAGTACAAGTACAACCCATCAGCATACCCAATGAAACCAATG AGTGTTATTGCAACAATATGGGATGGTTCAGAATGGGCAACAAATGGAGGGAAGTACCCAGTAAACTACAAGTATGCACCATTTGTGGTCTCAATTGGAG ATGCTGAATTGGCTGGCTGCATTCCAAATCCAGCTTCTTCTGGTTCTTGCTCCAAGACTAGCAGCAGTGGTAGTCCTTCAAGCTTGGATCCAGTGGATGG ATCAGAATTTGCTACTTTGTCACAGGAACAAAATATCGCTATGGACTGGGCAAGGAGGAAGCTCATGTTCTACTCTTACTGTAGTGATAAACCTAGGTAC AAGGTCCCACCATCTGAATGTAAATGA
AA sequence Show only first row Show all	>Lus10029165 pacid=23151654 polypeptide=Lus10029165 locus=Lus10029165.g ID=Lus10029165.BGIv1.0 annot-version=v1.0 MLCPLFPLLYLLLLTASGVSSRNTPYTPPNVKRLTDLFGPLTINQGFNTYYGGQHVKQFNNGSFATLSLDKASGAGLASTNKYLYGFFSAAIKLPSGLSP GVVVAFYLSNAETYPHNHDEIDFEILGHDRKNDWNLQTNVYANGSVSTGREEKFNFWFDPTQDYHNYSIIWNSHHIVFLVDSVPVREYKYNPSAYPMKPM SVIATIWDGSEWATNGGKYPVNYKYAPFVVSIGDAELAGCIPNPASSGSCSKTSSSGSPSSLDPVDGSEFATLSQEQNIAMDWARRKLMFYSYCSDKPRY KVPPSECK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10550		XTH33, XET	xyloglucan:xyloglucosyl transf...		Lus10029165 [exp]	0	1
AT3G03490		AtPEX19-1, PEX1...	peroxin 19-1 (.1)		Lus10010463 [exp]	12.0	0.7571
AT3G05010			Protein of unknown function, t...		Lus10040523 [exp]	24.3	0.6730
AT3G19320			Leucine-rich repeat (LRR) fami...		Lus10027878 [exp]	25.6	0.7572
AT1G31770		ABCG14	ATP-binding cassette G14, ATP-...		Lus10035692 [exp]	25.9	0.7030
AT2G38310		RCAR10, PYL4	regulatory components of ABA r...		Lus10002861 [exp]	33.2	0.7437
AT1G74940			Protein of unknown function (D...		Lus10027642 [exp]	35.6	0.7423
AT5G11900			Translation initiation factor ...		Lus10013512 [exp]	39.2	0.6990
AT5G19740			Peptidase M28 family protein (...		Lus10011133 [exp]	47.4	0.7336
AT4G31990		AAT3, ATAAT1, A...	ASPARTATE AMINOTRANSFERASE DEF...		Lus10001938 [exp]	51.0	0.7279
AT3G15140			Polynucleotidyl transferase, r...		Lus10005381 [exp]	62.8	0.7262

Compare expression of checked genes

Lus10029165 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.