Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23800 863 / 0 ALDH2B7 aldehyde dehydrogenase 2B7 (.1) AT3G48000 830 / 0 ALDH2A, ALDH2B4 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) AT3G24503 566 / 0 ALDH1A, REF1, ALDH2C4 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) AT3G48170 363 / 3e-120 ALDH10A9 aldehyde dehydrogenase 10A9 (.1) AT1G74920 357 / 5e-118 ALDH10A8 aldehyde dehydrogenase 10A8 (.1.2) AT1G79440 323 / 2e-104 ENF1, SSADH1, ALDH5F1 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) AT3G66658 207 / 4e-60 ALDH22A1 aldehyde dehydrogenase 22A1 (.1.2) AT2G24270 201 / 3e-58 ALDH11A3 aldehyde dehydrogenase 11A3 (.1.2.3.4) AT2G14170 188 / 2e-53 ALDH6B2 aldehyde dehydrogenase 6B2 (.1.2.3) AT1G54100 181 / 1e-50 ALDH7B4 aldehyde dehydrogenase 7B4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012999 [exp] 1012 / 0 AT1G23800 889 / 0.0 aldehyde dehydrogenase 2B7 (.1) Lus10023625 [exp] 544 / 0 AT3G24503 749 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10024259 [exp] 543 / 0 AT3G24503 745 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10023626 [exp] 535 / 0 AT3G24503 753 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10019387 [exp] 408 / 2e-135 AT3G24503 548 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10034115 [exp] 342 / 5e-111 AT3G48170 825 / 0.0 aldehyde dehydrogenase 10A9 (.1) Lus10042149 [exp] 340 / 5e-111 AT1G74920 850 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10043245 [exp] 333 / 2e-109 AT3G24503 487 / 2e-170 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10043470 [exp] 329 / 5e-107 AT1G74920 818 / 0.0 aldehyde dehydrogenase 10A8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G189900 [exp] 875 / 0 AT1G23800 899 / 0.0 aldehyde dehydrogenase 2B7 (.1) Potri.015G074100 [exp] 856 / 0 AT3G48000 885 / 0.0 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) Potri.012G078700 [exp] 844 / 0 AT3G48000 872 / 0.0 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) Potri.018G075000 [exp] 566 / 0 AT3G24503 751 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Potri.015G070600 [exp] 360 / 3e-119 AT1G74920 896 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.012G075600 [exp] 350 / 5e-115 AT1G74920 861 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.010G174000 [exp] 326 / 2e-105 AT1G79440 810 / 0.0 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) Potri.006G186800 [exp] 214 / 7e-63 AT2G24270 951 / 0.0 aldehyde dehydrogenase 11A3 (.1.2.3.4) Potri.018G109700 [exp] 213 / 2e-62 AT2G24270 950 / 0.0 aldehyde dehydrogenase 11A3 (.1.2.3.4) Potri.018G020600 [exp] 209 / 6e-61 AT2G24270 889 / 0.0 aldehyde dehydrogenase 11A3 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0099 [flax] [poplar] ALDH-like PF00171 [flax] [poplar] Aldedh Aldehyde dehydrogenase family
Representative CDS sequence Show only first row Show all	>Lus10029166 pacid=23151781 polypeptide=Lus10029166 locus=Lus10029166.g ID=Lus10029166.BGIv1.0 annot-version=v1.0 ATGGCTGCACGAAGGATCTCTTGGTTTCTCTCTCGCTCAGTTTCTTCTGGCTCTGGATCTGCCCTGCTTTCCAGAGGAGGCAAGAGAGCGGTGGGGTGTG GAATCAACAGGTACACGACTGCTGCAGCTGCTGAAGAACCCATTACTCCACCTGTCAGTGTTCCTCATACCCAACTCCTCATTAATGGCAGATTCGTTGA TGCTGCTTCAGGTAAGACATTCAAAACTTTGGACCCAAGAACTGGGGAAGTGATTGCTGATGTAGCTGAAGGCGATCTCGAGGATGTCAATCGAGCCGTC GCTGCTGCTCGCAAGGCCTTTGACGAAGGACCGTGGCCTAGGCTTCCTGCTTTTGAAAGGCAGAAGATACTGCTGAAGTGTGCCGATTTGGTCGACAAGC ACAACGATGACATTGCGGCTCTCGAGACATGGGACAATGGCAAGCCTTTTGAACAGTCTGCTAAAGTGGAAGTTCCTATGTTTTCGAGGCTCTTTCGATA CTATGCCGGTTGGGCGGATAAGATCCATGGCCTCACCGTCCAGGCTGATGGACCTTACCACGTGCAAACATTACACGAACCGATTGGAGTTGCGGGGCAG ATCATTCCGTGGAACTTCCCTCTTCTCATGTTTGCCTGGAAAGTTGGCCCAGCTTTAGCAACGGGGAACACCATTGTTCTCAAGACTGCTGAGCAAACAC CTTTATCTGCTCTCTATGTTGCTAGGCTGTTCCACGAGGCTGGACTCCCTGATGGTGTCTTGAACATAGTTTCCGGGTTCGGTCCGACTGCCGGTGCAGC TCTTGCGAGCCATATGGACGTTGACAAGCTTGCTTTCACTGGATCAACCGACACAGGAAAGATTGTTCTGGAGCTTGGAGCAAAAAGCAACTTGAAGCCG GTCACTTTGGAGCTTGGAGGGAAATCACCTTTCATTGTTTGTGAGGATGCTGACGTGGATCAGGCTGTTGAGCTTGCTCATTTCGCTTTGTTCTTCAACC AGGGACAATGCTGCTGTGCTGGCTCTCGGACATTTGTGCACGAGAAAATTTATGACGAATTTGTTGCAAAAGCCAAGGCACGTGCTTTGAAGCGCTCCGT TGGTGACCCATTCAAGTCCGGTATGGAGCAAGGTCCTCAGGTTGATTCAGATCAGTTTGAGAAGATCCTCAAGTACATTAGATCCGGAGTCGACAGTGGA GCGACCCTCGAAGCTGGAGGTGAACGGTTCGGTTCCAAGGGCTACTACATCCAGCCTACTGTCTTCTCAGATGTCAAGGATGACATGCTGATTGCAAAAG ATGAGATCTTTGGGCCGGTTCAGACAATTCTCAAGTTCAAGGACATTAATGAGGTGATCAAGAGATCAAACGCTAGCCGGTACGGACTTGCAGCTGGTGT GTTTACTCAGAACATAGACACAGCTAACACCTTGACAAGGGCGCTAAGAGCTGGGACGGTGTGGATCAATACCTTCGATATATTCGACGCTGCAATCCCC TTTGGAGGATACAAGATGAGTGGCCACGGAAGGGAGAAGGGTATCTACAGTCTGAGCAATTACTTGCAAGTCAAGGCAGTTGTCACCCCTTTGAAGAATC CTGCTTGGCTATAG
AA sequence Show only first row Show all	>Lus10029166 pacid=23151781 polypeptide=Lus10029166 locus=Lus10029166.g ID=Lus10029166.BGIv1.0 annot-version=v1.0 MAARRISWFLSRSVSSGSGSALLSRGGKRAVGCGINRYTTAAAAEEPITPPVSVPHTQLLINGRFVDAASGKTFKTLDPRTGEVIADVAEGDLEDVNRAV AAARKAFDEGPWPRLPAFERQKILLKCADLVDKHNDDIAALETWDNGKPFEQSAKVEVPMFSRLFRYYAGWADKIHGLTVQADGPYHVQTLHEPIGVAGQ IIPWNFPLLMFAWKVGPALATGNTIVLKTAEQTPLSALYVARLFHEAGLPDGVLNIVSGFGPTAGAALASHMDVDKLAFTGSTDTGKIVLELGAKSNLKP VTLELGGKSPFIVCEDADVDQAVELAHFALFFNQGQCCCAGSRTFVHEKIYDEFVAKAKARALKRSVGDPFKSGMEQGPQVDSDQFEKILKYIRSGVDSG ATLEAGGERFGSKGYYIQPTVFSDVKDDMLIAKDEIFGPVQTILKFKDINEVIKRSNASRYGLAAGVFTQNIDTANTLTRALRAGTVWINTFDIFDAAIP FGGYKMSGHGREKGIYSLSNYLQVKAVVTPLKNPAWL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23800		ALDH2B7	aldehyde dehydrogenase 2B7 (.1...		Lus10029166 [exp]	0	1
AT1G13700		PGL1	6-phosphogluconolactonase 1 (....		Lus10037065 [exp]	2.4	0.9314
AT3G30390			Transmembrane amino acid trans...		Lus10031964 [exp]	2.8	0.9474
AT3G30390			Transmembrane amino acid trans...		Lus10035140 [exp]	6.6	0.9386
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10022957 [exp]	7.1	0.9254
AT2G46960		CYP709B1	"cytochrome P450, family 709, ...		Lus10026085 [exp]	7.1	0.9187
AT4G31130			Protein of unknown function (D...		Lus10026052 [exp]	8.5	0.9270
AT2G37150			RING/U-box superfamily protein...		Lus10040389 [exp]	8.5	0.9430
AT1G71090			Auxin efflux carrier family pr...		Lus10036000 [exp]	11.7	0.9422
AT3G04660			F-box and associated interacti...		Lus10007277 [exp]	12.5	0.9187
AT5G03380			Heavy metal transport/detoxifi...		Lus10014421 [exp]	13.3	0.9252

Compare expression of checked genes

Lus10029166 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.