Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60170 570 / 0 EMB1220 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1) AT1G70400 206 / 5e-64 unknown protein AT5G27120 113 / 1e-26 NOP56-like pre RNA processing ribonucleoprotein (.1) AT3G05060 112 / 3e-26 NOP56-like pre RNA processing ribonucleoprotein (.1) AT5G27140 105 / 3e-24 NOP56-like pre RNA processing ribonucleoprotein (.1) AT1G56110 100 / 5e-22 NOP56 homolog of nucleolar protein NOP56 (.1) AT3G12860 97 / 3e-21 NOP56-like pre RNA processing ribonucleoprotein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012997 [exp] 821 / 0 AT1G60170 705 / 0.0 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1) Lus10027881 [exp] 230 / 2e-71 AT1G60170 198 / 4e-60 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1) Lus10002830 [exp] 156 / 2e-45 AT1G60170 135 / 7e-39 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1) Lus10027882 [exp] 129 / 3e-35 AT1G60170 148 / 2e-43 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1) Lus10033846 [exp] 115 / 4e-27 AT5G27120 758 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Lus10018995 [exp] 115 / 6e-27 AT5G27120 734 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Lus10001716 [exp] 113 / 2e-26 AT5G27120 722 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Lus10004143 [exp] 112 / 3e-26 AT5G27120 730 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Lus10002831 [exp] 95 / 4e-23 AT1G60170 112 / 2e-30 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G102800 [exp] 702 / 0 AT1G60170 610 / 0.0 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1) Potri.002G176000 [exp] 695 / 0 AT1G60170 591 / 0.0 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1) Potri.005G045600 [exp] 116 / 2e-27 AT5G27120 768 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Potri.013G032300 [exp] 114 / 8e-27 AT3G05060 737 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Potri.015G092900 [exp] 98 / 2e-21 AT3G12860 761 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Potri.012G095400 [exp] 96 / 8e-21 AT1G56110 761 / 0.0 homolog of nucleolar protein NOP56 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09785 [flax] [poplar] Prp31_C Prp31 C terminal domain PF01798 [flax] [poplar] Nop snoRNA binding domain, fibrillarin
Representative CDS sequence Show only first row Show all	>Lus10029168 pacid=23151854 polypeptide=Lus10029168 locus=Lus10029168.g ID=Lus10029168.BGIv1.0 annot-version=v1.0 ATGATGGCCATGCAAGTGCCCGTGGGGAGGCGCATCTCAACTCTCAAGGACACCAAGACAGCTTCTCACCCTTCGTCGGCCGGAGTTAAAAGTACAGGCG TAAGCTCAATCGTTGAATTCCTCGTCGAACCAATGGCAAATCTCGGCGATTCGTTTCTTGCGGACCTTGACGAGCTATCTGACAACGAAGCTGAAGATAT CGAAGAACAAGATGGCGATTTGGCAAATATGGATGAAGATGTGGACGGGGACTTGGCAGATATCGAAGCTCTCAATTATGACGATTTAGACTCGGTGTCG AAGCTACAGAATTCACAGAGGTACAATGACATAATGCAGAAAGTGGAAGAGGCATTAGTGAAAGGTTCTTACACCGAGGATCAAGGGACGGTCTTGGAAG ATGATCCCGAGTACCAGCTAATCGTGGATTGCAATGCATTATCAGTGGACATAGAGAATGAGATCATCATTATCCACAACTTCATTCGCGATAAGTACCG GCTGAAGTTTCCCGAACTGGAATCTCTCGTGCACCATCCTATCGATTATGCTCGTGTGGTGAAGAGAATCGGAAATGAGATGGATTTAACCCTTGTTGAT CTGGAAGGACTTTTGCCCTCGGCCATCATTATGGTTGTTTCAGTGACAGCATCGACGACAAGTGGTAAACCTCTTCCCGATGACGTGCTCCAAAAGACTA CCGATGCGTGTGATCGAGCTCTAACTCTGGACTCCGCAAAGAAAAAGGTTCTTGATTTTGTGGAGAGTAGAATGGGATACATTGCACCTAACGTGTCTGC AATTGTTGGTAGTGCTGTGGCAGCAAAACTCATGGGCACTGCTGGTGGTCTTACTTCGTTGGCCAAGATGCCTGCTTGTAACGTTCAACTTCTCGGAGCT AAGAAGAAGACCCTTGCCGGGTTTTCCAGTGCAACATCTCAATTTCGTTTGGGTTATATCGAGCAATCGGATATATTTCAGAGTACACCCCCTTCCTTGA GGATGCGCGCTTGTAGACTGCTGGCTTCGAAATCAACACTTGCAGCTCGTGTCGATTCCATCAGAGGAGATCCTTCTGGAAACACGGGAAGAACTCTCCG AGAAGAGATCAGTAAGAAGATAGAGAAGTGGCAAGAGCCTCCTCCTGCCAAGCAACCTAAACCACTACCAGTCCCTGATTCAGAGCCTAAGAAAAAGAGA GGTGGGCGACGTCAAAGGAAGATGAAAGAGAGATATGCAGTTACAGACATGAGGAAGCTTGCCAACAGGATGCAGTTTGGGATCCCTGAAGAGAGCTCGC TAGGTGATGGTCTAGGAGAAGGCTATGGAATGCTTGGTCAGGCAGGAAGCGGGAAGCTCCGAGTAGCAGCAAGCCAGAGCAAACTTGCTGCTAAAGTAGC AAAGAAATTCAAGGAAAAGCACTATGGCAGCAGTGGAGCTACATCCGGTCTCACTTCAAGTCTGGCATTCACACCTGTGCAGGGCATTGAGCTGAGCAAT CCACAAGCGCATGCACACCAATTAGGAGGAGGCGGAACTCAAAGTACCTACTTCTCGGAGACCGGTGCCTTTTCGAATATCAAGAGGAGCTGA
AA sequence Show only first row Show all	>Lus10029168 pacid=23151854 polypeptide=Lus10029168 locus=Lus10029168.g ID=Lus10029168.BGIv1.0 annot-version=v1.0 MMAMQVPVGRRISTLKDTKTASHPSSAGVKSTGVSSIVEFLVEPMANLGDSFLADLDELSDNEAEDIEEQDGDLANMDEDVDGDLADIEALNYDDLDSVS KLQNSQRYNDIMQKVEEALVKGSYTEDQGTVLEDDPEYQLIVDCNALSVDIENEIIIIHNFIRDKYRLKFPELESLVHHPIDYARVVKRIGNEMDLTLVD LEGLLPSAIIMVVSVTASTTSGKPLPDDVLQKTTDACDRALTLDSAKKKVLDFVESRMGYIAPNVSAIVGSAVAAKLMGTAGGLTSLAKMPACNVQLLGA KKKTLAGFSSATSQFRLGYIEQSDIFQSTPPSLRMRACRLLASKSTLAARVDSIRGDPSGNTGRTLREEISKKIEKWQEPPPAKQPKPLPVPDSEPKKKR GGRRQRKMKERYAVTDMRKLANRMQFGIPEESSLGDGLGEGYGMLGQAGSGKLRVAASQSKLAAKVAKKFKEKHYGSSGATSGLTSSLAFTPVQGIELSN PQAHAHQLGGGGTQSTYFSETGAFSNIKRS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60170		EMB1220	embryo defective 1220, pre-mRN...		Lus10029168 [exp]	0	1
AT2G35035		URED	urease accessory protein D (.1...		Lus10030170 [exp]	1.0	0.9250
AT3G03740		ATBPM4	BTB-POZ and MATH domain 4 (.1)		Lus10008421 [exp]	1.7	0.9168
AT4G18465			RNA helicase family protein (....		Lus10025127 [exp]	2.8	0.9169
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Lus10024562 [exp]	4.0	0.9037
AT1G68310		AE7	AS1/2 ENHANCER7, Protein of un...		Lus10035403 [exp]	5.2	0.9037
AT3G16230			Predicted eukaryotic LigT (.1....		Lus10037578 [exp]	5.3	0.9166
AT1G22800			S-adenosyl-L-methionine-depend...		Lus10018987 [exp]	6.3	0.9152
AT3G01330	E2F_DP	E2FF, E2L2, DEL...	E2F-LIKE 2, DP-E2F-like protei...		Lus10005840 [exp]	9.2	0.8876
AT1G31970		STRS1	STRESS RESPONSE SUPPRESSOR 1, ...		Lus10000894 [exp]	9.5	0.9013
AT1G49180			protein kinase family protein ...		Lus10033518 [exp]	12.0	0.8998

Compare expression of checked genes

Lus10029168 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.