Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23820 501 / 5e-179 SPDS1 spermidine synthase 1 (.1.2) AT1G70310 496 / 7e-178 SPDS2 spermidine synthase 2 (.1) AT5G53120 395 / 2e-137 SPMS, SPDS3, ATSPDS3 spermidine synthase 3 (.1.2.3.4.5.6) AT5G19530 113 / 2e-28 ACL5 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012996 [exp] 582 / 0 AT1G23820 537 / 0.0 spermidine synthase 1 (.1.2) Lus10030629 [exp] 540 / 0 AT1G70310 531 / 0.0 spermidine synthase 2 (.1) Lus10030861 [exp] 520 / 0 AT1G23820 514 / 0.0 spermidine synthase 1 (.1.2) Lus10039416 [exp] 483 / 5e-173 AT1G23820 509 / 0.0 spermidine synthase 1 (.1.2) Lus10019016 [exp] 411 / 6e-144 AT5G53120 571 / 0.0 spermidine synthase 3 (.1.2.3.4.5.6) Lus10003398 [exp] 404 / 6e-141 AT5G53120 563 / 0.0 spermidine synthase 3 (.1.2.3.4.5.6) Lus10018259 [exp] 337 / 7e-116 AT1G23820 374 / 6e-130 spermidine synthase 1 (.1.2) Lus10040649 [exp] 131 / 2e-36 AT1G23820 139 / 2e-39 spermidine synthase 1 (.1.2) Lus10010538 [exp] 112 / 3e-28 AT5G19530 439 / 1e-155 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G094600 [exp] 518 / 0 AT1G70310 538 / 0.0 spermidine synthase 2 (.1) Potri.008G147200 [exp] 507 / 0 AT1G70310 532 / 0.0 spermidine synthase 2 (.1) Potri.012G002600 [exp] 406 / 4e-142 AT5G53120 582 / 0.0 spermidine synthase 3 (.1.2.3.4.5.6) Potri.015G018900 [exp] 394 / 4e-137 AT5G53120 545 / 0.0 spermidine synthase 3 (.1.2.3.4.5.6) Potri.010G089200 [exp] 102 / 2e-24 AT5G19530 447 / 2e-158 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.006G222200 [exp] 100 / 1e-23 AT5G19530 533 / 0.0 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.008G151800 [exp] 97 / 1e-22 AT5G19530 445 / 7e-158 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01564 [flax] [poplar] Spermine_synth Spermine/spermidine synthase domain
Representative CDS sequence Show only first row Show all	>Lus10029169 pacid=23151666 polypeptide=Lus10029169 locus=Lus10029169.g ID=Lus10029169.BGIv1.0 annot-version=v1.0 ATGACTCAAGAAACTGTTGCAACATCGACCGATTTGCCCGTCAAAAGGCCCAGAGAGGAAGACGACAACGCAGCATCAGCCGCCGCCGCCGACGAAGCCA TGGAAACCGACAGCGCAGCTGAAAATGGTACCCCTAATGTTTCCACCGTCATCCCCGGCTGGTTCTCCGAGATGAGCCCAATGTGGCCTGGAGAGGCACA TTCTTTGAAGGTGGAGAAGATCTTGTTCCAGGGGAAGTCTGATTACCAGAATGTTATGGTATTTCAGTCAGCTACATACGGAAAGGTTCTGGTTTTGGAT GGAGTGATCCAGCTCACAGAGAGGGATGAATGTGCTTACCAAGAAATGATCACTCACCTTCCACTCTCTTCAATCCCCAACCCTAAAAAGGTTTTGGTTA TCGGTGGAGGAGATGGTGGTGTCCTGAGAGAAGTGGGACGCCACTCTTCCGTTGAGCAGATAGATATATGTGAAATTGACAAGATGGTTGTTGATGTATC TAAACAGTTCTTCCCAAAAGTAGCAATCGGATACGAGGATCCCCGTGTTAACCTCCATATCGGTGATGGAGTGGCATTTTTGAATGCTGTTCCTGAAGGG ACATACGACGCAGTCATCGTAGACTCTTCTGACCCTATAGGTCCTGCCCAGGAATTATTCGAGAAGCCATTCTTCCAGTCAGTAGCAAACGCTCTTCGTC CAGGAGGAGTTGTGTGTACTCAGGCCGAAAGCATATGGCTTCATATGCACATCATCGAAGATATCGTGATAAACTGTCGCCAGATCTTCAAAGGCTCTGT CAACTATGCATGGACCACAGTCCCTACATATCCAAGTGGAGTGATTGGTTTCATGCTGTGCTCTACTGAAGGACCCTCTGTGGATTTCAAGAATCCAGCG AGTTCGATTGACATGAACACTGATTATAACAAGGCAAGAGGGCCACTCAAGTTCTACAATTCCGAGATTCATGCTGCTGCATTCTGTCTACCGGCTTTCG CAAAGAAGGTGATCGAGTCGAAGGCTAAATGA
AA sequence Show only first row Show all	>Lus10029169 pacid=23151666 polypeptide=Lus10029169 locus=Lus10029169.g ID=Lus10029169.BGIv1.0 annot-version=v1.0 MTQETVATSTDLPVKRPREEDDNAASAAAADEAMETDSAAENGTPNVSTVIPGWFSEMSPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSATYGKVLVLD GVIQLTERDECAYQEMITHLPLSSIPNPKKVLVIGGGDGGVLREVGRHSSVEQIDICEIDKMVVDVSKQFFPKVAIGYEDPRVNLHIGDGVAFLNAVPEG TYDAVIVDSSDPIGPAQELFEKPFFQSVANALRPGGVVCTQAESIWLHMHIIEDIVINCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPSVDFKNPA SSIDMNTDYNKARGPLKFYNSEIHAAAFCLPAFAKKVIESKAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23820		SPDS1	spermidine synthase 1 (.1.2)		Lus10029169 [exp]	0	1
AT4G15450			Senescence/dehydration-associa...		Lus10034970 [exp]	2.4	0.8959
AT5G36930			Disease resistance protein (TI...		Lus10000331 [exp]	4.4	0.9183
AT2G27140			HSP20-like chaperones superfam...		Lus10003356 [exp]	8.4	0.9175
AT1G79430	GARP	WDY, APL	WOODY, ALTERED PHLOEM DEVELOPM...		Lus10001844 [exp]	11.5	0.9174
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Lus10036182 [exp]	12.2	0.8702
AT5G40100			Disease resistance protein (TI...		Lus10000329 [exp]	13.4	0.8912
AT5G16500			Protein kinase superfamily pro...		Lus10020383 [exp]	13.7	0.8694
AT3G15800			Glycosyl hydrolase superfamily...		Lus10011482 [exp]	13.9	0.8917
AT1G75260			oxidoreductases, acting on NAD...		Lus10001963 [exp]	16.6	0.8960
					Lus10016944 [exp]	18.2	0.8970

Compare expression of checked genes

Lus10029169 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.