Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47850 659 / 0 CCR4 CRINKLY4 related 4 (.1) AT3G55950 407 / 4e-130 CCR3, ATCRR3 CRINKLY4 related 3 (.1) AT3G59420 279 / 1e-81 ACR4 crinkly4 (.1) AT3G09780 254 / 3e-73 CCR1, ATCRR1 CRINKLY4 related 1 (.1) AT1G67720 239 / 6e-67 Leucine-rich repeat protein kinase family protein (.1) AT1G24030 224 / 3e-66 Protein kinase superfamily protein (.1.2) AT1G69790 223 / 2e-65 Protein kinase superfamily protein (.1) AT1G26970 220 / 3e-64 Protein kinase superfamily protein (.1) AT3G20530 219 / 4e-64 Protein kinase superfamily protein (.1) AT3G07070 219 / 7e-64 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012995 [exp] 547 / 0 AT5G47850 372 / 9e-125 CRINKLY4 related 4 (.1) Lus10040663 [exp] 373 / 3e-117 AT3G55950 642 / 0.0 CRINKLY4 related 3 (.1) Lus10018242 [exp] 370 / 5e-116 AT3G55950 632 / 0.0 CRINKLY4 related 3 (.1) Lus10000764 [exp] 328 / 1e-99 AT3G59420 1255 / 0.0 crinkly4 (.1) Lus10015956 [exp] 328 / 2e-99 AT3G59420 1258 / 0.0 crinkly4 (.1) Lus10037051 [exp] 248 / 6e-69 AT1G67720 1293 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10036935 [exp] 244 / 8e-69 AT1G67720 1303 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10010703 [exp] 226 / 5e-67 AT1G24030 578 / 0.0 Protein kinase superfamily protein (.1.2) Lus10029187 [exp] 225 / 2e-66 AT1G24030 582 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G078300 [exp] 836 / 0 AT5G47850 699 / 0.0 CRINKLY4 related 4 (.1) Potri.013G103300 [exp] 792 / 0 AT5G47850 649 / 0.0 CRINKLY4 related 4 (.1) Potri.008G068700 [exp] 421 / 2e-135 AT3G55950 786 / 0.0 CRINKLY4 related 3 (.1) Potri.010G188600 [exp] 412 / 3e-132 AT3G55950 791 / 0.0 CRINKLY4 related 3 (.1) Potri.001G252400 [exp] 397 / 1e-126 AT3G55950 692 / 0.0 CRINKLY4 related 3 (.1) Potri.007G128400 [exp] 308 / 7e-92 AT3G59420 1264 / 0.0 crinkly4 (.1) Potri.017G029900 [exp] 306 / 4e-91 AT3G59420 1264 / 0.0 crinkly4 (.1) Potri.016G089200 [exp] 242 / 4e-69 AT3G09780 946 / 0.0 CRINKLY4 related 1 (.1) Potri.010G221200 [exp] 236 / 5e-67 AT2G39180 899 / 0.0 CRINKLY4 related 2 (.1) Potri.016G084900 [exp] 237 / 3e-66 AT2G37050 1276 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10029170 pacid=23151736 polypeptide=Lus10029170 locus=Lus10029170.g ID=Lus10029170.BGIv1.0 annot-version=v1.0 ATGGCGGCTTCTTCTTCTTTGTCCCTTCTTCCACCCCTCTTCAGCTTCCTCTTTCTTTTCTCACTATTGATCATCCACTCTCCTTGCTCTGCTCTCTCCA CAGTCTCCATCTCTGAAACCTCCAACCAAACTCTCGTTTGCGCAATCGTTCAACCCCTCAACACCCACAACCAATCACCTTTCCTCAACTGCTCCAATCT CAACAATGGGATCACTGGAGTTCCGATCAATTCCACCGTTCCTTTCTCCGGAATCGTCTCCGGAGATGGCTTCGTTTGTGCTGTCAGAACATTCAACTCT TCTTCTTCCTCCTCCTCTGTTTCCGCTTCAAACCTAGTCTGCTGGCGATTCTCCGCCGAATCGGCCATCATGGAGAGGAAGAGAATCTACTCCGGCTCTG AGATTACGGAGCTCGAATCAGGTAACTCCCACATCTGCGGCCTAATCGGAAGTAGTCAGAATACATTCGACTGCTGGCAATGGCCGGAATTCAATCGCCG GCGGGCTATCCCCAATTTTTCGGCGATCGCAGTGGGGGGAAATTTCGTCTGTGGGTTATCCTCCGGAAGCATAACATGCCTAGACGACGATACTACTATT TCTTCCAGCAGCAATGTGATTCGGCAAGTTCCCGCCGGAGGAGGAGGAAACTATACAGCAATTGCAGCCGGATTCCGTCACGCCTGTGCTCTAAGATCAG ATGGGCGATTAACCTGTTGGGGCGAATTGGACTCGACTACTCCAGATGGGGTGTTTGTTTCCATGGCGCTGGGTGAGAATAGAAGCTGCGGATTGAGGAG CGATGATACAGTGGCTTGCTGGGGGCAGAATGGTTTCCGTTTGCCGGAAAGTTTGAACGGGGTTCATTACATCACTATCGTGGCCAAAAGAAGCGTATTC TGTGGCGTCCGGCGAGAGGATTTTTCACTCCATTGTTGGGATAGTAACATAATTTATCCAGAGGTTTTTGCCAGAGTTCTTCCCAGTCCATGCCGAAATA GAAATCAGTGTCCTTGTGGCCCATTAACCGGAAGCGACGGACTATGCAGGTCCGGTTACAGCATTTGCCAAAATTGCATCCCGTCGGCGCCGCCCGGCGG CGGAGGCGGCGGATGGAGTAGTAGGATGACAGTCTACACAGTGGTGGGTTCTGTGGGATCGTTAGCTATATTGTTAGTTATTGGGTTCTTGGTGTACAAG CGGTTCAAAAGCAGTAGCTGCAGCAGAGTCCATGATTCCGGTCCGATGGACGAGACATTGCCGAGACAACAACCAGGAACAGAGCATCAATGGCGAAATG ATCAATCGTTGCCGAGCGTACTGGAGAAGAAGTTGAGCGAATTGGCGAGCATGGGAAATGCAGGACAGTTGGAGGAGTTCTCATTGGAGATTCTGCTCGA ATCGACGAGCGATTTCGCGGAGGATCACAAGATTGGGACGGGGAGCTTTGGGACTGTGTATCGAGGAACTTTGCCGGATGGGAGGGAAGTAGCGATCAAG CGAGCGGAGACTTCTTCCGGTTCATCGATGGGGATCTTCATCAAACATCAAGAGGACAAAGACAAGGCGTTCGTCCACGAGCTCGAATCGCTATCCCGGC TGCACCACAAGAACCTCGTGAGACTCTTGGGATTCTGCGAGGACACCACCGAACGGATCTTAGTCTACGAGTATATGGAAAATGGGAGCCTCCACGACCA CCTCCACCGGCTCGATGAGTCCCCGCTGGCCACCTGGTCCGCCCGGATCAAGGTGGCGCTAGACGCCGCTCGAGGAATCGAGTACCTCCACGTGTACTCG GTACCACCAATAATCCACCGCGACATTAAGTCCTCTAACATTCTGCTCGACGGCTTGTGGAATGCCAAGGTATCCGATTTTGGACTCTCACTGATGGGCC CTGCAGACGATGAGTCTCACCTGTCGATGCGAGCTGCGGGGACGGTGGGGTACATGGACCCGGAATACTACCGACTCCAACAGTTGACGACAAAGAGCGA CGTCTACAGCTTCGGGATAGTGATGCTCGAAATGTTGTCCGGATACAAGGCTATACACAAGAACGAGAATGGGGTGCCGAGGAATGTGGTTGATTACATC GTTCCGTACATTGTACACGATGAGATACACCGGGTCTTAGACTCAAGAGTGCCGCCCCCGACGCCGTTCGAGATAGAGGCGGTAGCGTATGTCGGGTACT TGGCCGCCGATTGTGTTACATTGGAAGGTCGAGATAGGCCGTCCATGACCGACATTGTAAATAGCTTGGAAAGAGCATTGTCTGCCTGTTTAGTTCATTC GCTCTCCCGATCAACTACCGGCTCTTCTGGGTAG
AA sequence Show only first row Show all	>Lus10029170 pacid=23151736 polypeptide=Lus10029170 locus=Lus10029170.g ID=Lus10029170.BGIv1.0 annot-version=v1.0 MAASSSLSLLPPLFSFLFLFSLLIIHSPCSALSTVSISETSNQTLVCAIVQPLNTHNQSPFLNCSNLNNGITGVPINSTVPFSGIVSGDGFVCAVRTFNS SSSSSSVSASNLVCWRFSAESAIMERKRIYSGSEITELESGNSHICGLIGSSQNTFDCWQWPEFNRRRAIPNFSAIAVGGNFVCGLSSGSITCLDDDTTI SSSSNVIRQVPAGGGGNYTAIAAGFRHACALRSDGRLTCWGELDSTTPDGVFVSMALGENRSCGLRSDDTVACWGQNGFRLPESLNGVHYITIVAKRSVF CGVRREDFSLHCWDSNIIYPEVFARVLPSPCRNRNQCPCGPLTGSDGLCRSGYSICQNCIPSAPPGGGGGGWSSRMTVYTVVGSVGSLAILLVIGFLVYK RFKSSSCSRVHDSGPMDETLPRQQPGTEHQWRNDQSLPSVLEKKLSELASMGNAGQLEEFSLEILLESTSDFAEDHKIGTGSFGTVYRGTLPDGREVAIK RAETSSGSSMGIFIKHQEDKDKAFVHELESLSRLHHKNLVRLLGFCEDTTERILVYEYMENGSLHDHLHRLDESPLATWSARIKVALDAARGIEYLHVYS VPPIIHRDIKSSNILLDGLWNAKVSDFGLSLMGPADDESHLSMRAAGTVGYMDPEYYRLQQLTTKSDVYSFGIVMLEMLSGYKAIHKNENGVPRNVVDYI VPYIVHDEIHRVLDSRVPPPTPFEIEAVAYVGYLAADCVTLEGRDRPSMTDIVNSLERALSACLVHSLSRSTTGSSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47850		CCR4	CRINKLY4 related 4 (.1)		Lus10029170 [exp]	0	1
AT1G77490		TAPX	thylakoidal ascorbate peroxida...		Lus10025680 [exp]	1.7	0.8567
AT5G19980		GONST4	golgi nucleotide sugar transpo...		Lus10018311 [exp]	2.8	0.8554
AT3G25250		AtOXI1, OXI1, A...	oxidative signal-inducible1, A...		Lus10038221 [exp]	3.0	0.8480
AT5G17350			unknown protein		Lus10017620 [exp]	4.0	0.8070
AT5G47850		CCR4	CRINKLY4 related 4 (.1)		Lus10012995 [exp]	4.2	0.8272
AT5G51040			unknown protein		Lus10043024 [exp]	6.0	0.8324
AT5G15710			Galactose oxidase/kelch repeat...		Lus10031955 [exp]	6.3	0.8022
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10032188 [exp]	8.7	0.8289
AT4G08850			Leucine-rich repeat receptor-l...		Lus10020936 [exp]	9.5	0.7778
AT5G19980		GONST4	golgi nucleotide sugar transpo...		Lus10017141 [exp]	12.4	0.8131

Compare expression of checked genes

Lus10029170 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.