Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53710 84 / 1e-18 AGD6 ARF-GAP domain 6 (.1.2) AT2G37550 81 / 6e-18 ASP1, AGD7 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2) AT2G35210 64 / 6e-12 RPA, AGD10, MEE28 MATERNAL EFFECT EMBRYO ARREST 28, root and pollen arfgap (.1.2) AT5G46750 63 / 1e-11 AGD9, AGD8 ARF-GAP domain 9 (.1) AT4G17890 63 / 2e-11 UBP20, AGD8 ARF-GAP domain 8 (.1.2) AT4G21160 51 / 1e-07 ZAC, AGD12 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) AT4G05330 51 / 1e-07 AGD13 ARF-GAP domain 13 (.1) AT3G17660 47 / 1e-06 AGD15 ARF-GAP domain 15 (.1) AT5G54310 46 / 7e-06 NEV, AGD5 NEVERSHED, ARF-GAP domain 5 (.1) AT3G07940 40 / 0.001 Calcium-dependent ARF-type GTPase activating protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003978 [exp] 84 / 6e-19 AT2G37550 516 / 0.0 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2) Lus10023765 [exp] 82 / 3e-18 AT2G37550 507 / 4e-178 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2) Lus10038317 [exp] 63 / 1e-12 AT2G37550 166 / 5e-50 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2) Lus10000903 [exp] 64 / 4e-12 AT4G17890 469 / 3e-165 ARF-GAP domain 8 (.1.2) Lus10004562 [exp] 64 / 5e-12 AT4G17890 512 / 0.0 ARF-GAP domain 8 (.1.2) Lus10004561 [exp] 62 / 2e-11 AT4G17890 451 / 2e-158 ARF-GAP domain 8 (.1.2) Lus10036211 [exp] 56 / 2e-10 AT2G37550 67 / 1e-14 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2) Lus10004125 [exp] 56 / 3e-09 AT4G17890 283 / 4e-94 ARF-GAP domain 8 (.1.2) Lus10018445 [exp] 50 / 4e-07 AT5G54310 265 / 2e-83 NEVERSHED, ARF-GAP domain 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G084000 [exp] 84 / 9e-19 AT3G53710 498 / 8e-175 ARF-GAP domain 6 (.1.2) Potri.016G095100 [exp] 82 / 2e-18 AT3G53710 462 / 9e-161 ARF-GAP domain 6 (.1.2) Potri.001G142100 [exp] 66 / 2e-12 AT4G17890 535 / 0.0 ARF-GAP domain 8 (.1.2) Potri.003G092300 [exp] 63 / 1e-11 AT4G17890 525 / 0.0 ARF-GAP domain 8 (.1.2) Potri.011G098500 [exp] 54 / 2e-08 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Potri.001G372000 [exp] 52 / 8e-08 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Potri.012G036900 [exp] 49 / 7e-07 AT3G17660 260 / 4e-88 ARF-GAP domain 15 (.1) Potri.011G044100 [exp] 47 / 4e-06 AT5G54310 347 / 3e-115 NEVERSHED, ARF-GAP domain 5 (.1) Potri.011G127000 [exp] 47 / 4e-06 AT5G54310 466 / 4e-161 NEVERSHED, ARF-GAP domain 5 (.1) Potri.004G035800 [exp] 46 / 6e-06 AT5G54310 333 / 2e-109 NEVERSHED, ARF-GAP domain 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01412 [flax] [poplar] ArfGap Putative GTPase activating protein for Arf
Representative CDS sequence Show only first row Show all	>Lus10029174 pacid=23151827 polypeptide=Lus10029174 locus=Lus10029174.g ID=Lus10029174.BGIv1.0 annot-version=v1.0 ATGGCGGGGCCTAAACGCTGCGGGATCTCCTCCAATCGCAAGCTGCGAACAATACCTGCGCGGGCTGCTCCTCGAAGAGGAAACCTGTATTGGCCTCCGT CTCAATACGGAATCTTCTTGTGCCTCAACTGCGGCATTAAGCACGAAGCTCTCGGCTTCCACAACTCCTTCCTCCGATCCCTCAGCGTGAGGTCTTGGTC CGAGATCGAGATCAAGAAGATGGAGGTCGGTGGCAACGAAAACCTCAACGCATTCTTTTCAAGCGAGGAATTCCTAAGGAGACCGACATCCTCTACAAGT ACCGCTCCTAGGTTGCCGCAGCTTACCGCGACCGGATCCAGGCTTTGGCCGAAGGGAGGCCGTGGGATGATCCGAATATTTAGTCACCCAGTGCTTACCA AATGTAAACAGGAAGCTGCGTGTGTTGTTACTTATAAGCAATCCGATAAGAAGGAAGCTTTTGATGCAGATATGATTGATATGCAATACCAGAGCTGGCA AATGTCGGAGCTAATTGATAGGCAGGCTAAAAAACTTACTAGTGCGCTGCAGTTCAATGGTATTGCCATTGGTAAGAAAGCGAAAGCTTCAGATGAAGCT GATGAATTTGATGATGTGTAG
AA sequence Show only first row Show all	>Lus10029174 pacid=23151827 polypeptide=Lus10029174 locus=Lus10029174.g ID=Lus10029174.BGIv1.0 annot-version=v1.0 MAGPKRCGISSNRKLRTIPARAAPRRGNLYWPPSQYGIFLCLNCGIKHEALGFHNSFLRSLSVRSWSEIEIKKMEVGGNENLNAFFSSEEFLRRPTSSTS TAPRLPQLTATGSRLWPKGGRGMIRIFSHPVLTKCKQEAACVVTYKQSDKKEAFDADMIDMQYQSWQMSELIDRQAKKLTSALQFNGIAIGKKAKASDEA DEFDDV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53710		AGD6	ARF-GAP domain 6 (.1.2)		Lus10029174 [exp]	0	1
AT2G17080			Arabidopsis protein of unknown...		Lus10023960 [exp]	5.2	0.8437
AT4G22000			unknown protein		Lus10008487 [exp]	8.8	0.8674
AT4G35210			Arabidopsis protein of unknown...		Lus10025122 [exp]	10.7	0.8492
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10033391 [exp]	13.7	0.8181
					Lus10005096 [exp]	15.3	0.8634
AT1G70300		KUP6	K+ uptake permease 6, K+ uptak...		Lus10029173 [exp]	16.4	0.8351
AT1G01180			S-adenosyl-L-methionine-depend...		Lus10010109 [exp]	17.0	0.8263
					Lus10011277 [exp]	27.1	0.8286
AT2G12646			PLATZ transcription factor fam...		Lus10039989 [exp]	30.4	0.8471
AT5G44200		ATCBP20, CBP20	CAP-binding protein 20 (.1.2)		Lus10017682 [exp]	32.0	0.8440

Compare expression of checked genes

Lus10029174 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.