Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70280 485 / 6e-168 NHL domain-containing protein (.1.2) AT1G23880 436 / 4e-148 NHL domain-containing protein (.1) AT5G14890 274 / 4e-83 NHL domain-containing protein (.1) AT3G14860 204 / 3e-59 NHL domain-containing protein (.1.2) AT1G23890 139 / 2e-37 NHL domain-containing protein (.1.2) AT1G56500 47 / 3e-05 haloacid dehalogenase-like hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012989 [exp] 837 / 0 AT1G70280 538 / 0.0 NHL domain-containing protein (.1.2) Lus10030850 [exp] 585 / 0 AT1G23880 464 / 2e-158 NHL domain-containing protein (.1) Lus10039484 [exp] 337 / 2e-109 AT1G70280 423 / 1e-143 NHL domain-containing protein (.1.2) Lus10039421 [exp] 272 / 1e-87 AT1G23880 329 / 1e-110 NHL domain-containing protein (.1) Lus10014529 [exp] 251 / 6e-77 AT5G14890 355 / 8e-115 NHL domain-containing protein (.1) Lus10032158 [exp] 247 / 7e-76 AT1G70280 342 / 2e-113 NHL domain-containing protein (.1.2) Lus10030637 [exp] 199 / 1e-58 AT1G70280 244 / 3e-76 NHL domain-containing protein (.1.2) Lus10030849 [exp] 130 / 8e-33 AT1G23890 271 / 7e-88 NHL domain-containing protein (.1.2) Lus10030639 [exp] 77 / 7e-15 AT1G23890 191 / 2e-57 NHL domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G147700 [exp] 581 / 0 AT1G70280 568 / 0.0 NHL domain-containing protein (.1.2) Potri.010G094200 [exp] 570 / 0 AT1G70280 511 / 5e-179 NHL domain-containing protein (.1.2) Potri.016G092200 [exp] 411 / 7e-139 AT1G70280 465 / 3e-160 NHL domain-containing protein (.1.2) Potri.001G387500 [exp] 214 / 2e-62 AT3G14860 534 / 0.0 NHL domain-containing protein (.1.2) Potri.011G107800 [exp] 211 / 5e-62 AT3G14860 553 / 0.0 NHL domain-containing protein (.1.2) Potri.004G087300 [exp] 137 / 2e-35 AT1G23890 261 / 9e-84 NHL domain-containing protein (.1.2) Potri.017G129500 [exp] 132 / 9e-34 AT1G23890 247 / 3e-78 NHL domain-containing protein (.1.2) Potri.008G122450 [exp] 55 / 2e-09 AT1G23880 49 / 3e-08 NHL domain-containing protein (.1) Potri.009G072933 [exp] 46 / 2e-06 AT1G23880 44 / 7e-07 NHL domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF01436 [flax] [poplar] NHL NHL repeat
Representative CDS sequence Show only first row Show all	>Lus10029176 pacid=23151873 polypeptide=Lus10029176 locus=Lus10029176.g ID=Lus10029176.BGIv1.0 annot-version=v1.0 ATGAACGCAATGGGGAAGAATGTGTTCATCTTGGCCGTCATGGGCTTACTTCTCTTTGCTGCCGGTGGCGCCTCTTCAGCCCCTGTCAACTCTCCTGCAA AAATCGTTAATGGCATTTTCTCGAACACCTTGTCTGTGATAATGAAATGGGTATGGTCGCTCAAGGCCTCCAGCAAAACAGCTATGACTGGTCGTCCGTT GATGAAGTTCGAGCCTGGTTACACTGTGGAGACCATGTTCGATGGAAGCAAAGCTGGGATCGATCCTCACTCTGTAGAAGTTCTGCCCAGTGGGGAGCTT CTGATTCTTGACTCTGCTAACAATAACCTTTACAAGATTCCTTCTTCTCTGTCCATGTATACGAAGCCTAAGCTGGTTGCTGGATCTGCTGATGGGTACT CTGGATATGTCGATGGGAAGCCTGGCGAGGCGAAGATGAATAACCCTAAGGGTGTTGCTGTCGATGACCGGGGGAACATATATGTTGCGGACACGATGAA TAATGCCATCAGGAAGATCAGTGATTCAGGGGTTACGACGATTGCTGGAGGGAAACGAGCGAATGGAGGAGGAGGTGGCAGCCATATAGATGGAGCAAGT GAAGATGCGAAATTCTCAAATGATTTCGACGTGGTTTACATGGGAAGCAGTTGTTCCCTCCTTGTGATAGACAGAGGAAACAGAGCCATTAGAGAGATCC AGCTCCACTTTGATGACTGTGCATATCAGTATGGAAGTGGCTTCCCATTTGAGATTGCGCTCCTTCTGGCTGCTGGCCTTTTCGGCTACTTGGTCGCTTT CCTCCAGCGTAGGATGGGAACGATTGCTTCTTCCTCGCAGGATCATCAACGTGTGATGAAGCCGAGCGTGGCTGAAGCAGCTCCAGCTCCGAAACCACTC AAATCGGTCCGTCCACCATTGATCCCAACCGAAGATGATCAGGAGAAGCAAGAGGAGACCTTCTTTGTATCTCTCGGGAAGCTTTTTGCCAATACTAGCT CGTCCTTTATGGAGATAGTGGGGGGAATAGTTCCTGGGTTGAGAAAGAAGTCACCATCAGCTACTTATCAGTTCCAAAGCCAGCAGTATCAGCAAAGACA GACAGCAGGTTGGCCTAGCCAGGAGAGCTACGTAATACGAGACGAAGACGAGCCACCCACTGTCGAAGCAAGGACTCCTACACCAAGGAGGAAGACGTAT GCCTTCATGTCCAAGGATGCTGAGAAGATGCAAAGGTGGAGACAGGGCCGCTCATTCTATAGCGGTCAGGACGGTGAGTCGCCGCCACCACAACAGCAGC AGCAGCATCAACAACAACAACAACAACAACAGCATCAGCATCAGCAACAGCAGCATTCGCAGGTGCAGTCGCAGAAGCAGTCGAAGCATCACCTTCGAAG GTATCAGTCATCAGTGTCTACGGTTCCACACACTTACTACGAGCAGAGCCATGAGGAGACTAATGAGATAGTGTTTGGAGCTGTCCAAGAGCACGATACG AAGGCTCGAGCTTCGGTGGTTAAACCTGTGGATTATGGAGATCCTATGTACAACCGCCACCACCACGGTGGGATTCGAGTCCGTTCCAGCTCTTCTGCTG CATATGGGAATGGCTTCTGCTGA
AA sequence Show only first row Show all	>Lus10029176 pacid=23151873 polypeptide=Lus10029176 locus=Lus10029176.g ID=Lus10029176.BGIv1.0 annot-version=v1.0 MNAMGKNVFILAVMGLLLFAAGGASSAPVNSPAKIVNGIFSNTLSVIMKWVWSLKASSKTAMTGRPLMKFEPGYTVETMFDGSKAGIDPHSVEVLPSGEL LILDSANNNLYKIPSSLSMYTKPKLVAGSADGYSGYVDGKPGEAKMNNPKGVAVDDRGNIYVADTMNNAIRKISDSGVTTIAGGKRANGGGGGSHIDGAS EDAKFSNDFDVVYMGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSGFPFEIALLLAAGLFGYLVAFLQRRMGTIASSSQDHQRVMKPSVAEAAPAPKPL KSVRPPLIPTEDDQEKQEETFFVSLGKLFANTSSSFMEIVGGIVPGLRKKSPSATYQFQSQQYQQRQTAGWPSQESYVIRDEDEPPTVEARTPTPRRKTY AFMSKDAEKMQRWRQGRSFYSGQDGESPPPQQQQQHQQQQQQQQHQHQQQQHSQVQSQKQSKHHLRRYQSSVSTVPHTYYEQSHEETNEIVFGAVQEHDT KARASVVKPVDYGDPMYNRHHHGGIRVRSSSSAAYGNGFC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70280			NHL domain-containing protein ...		Lus10029176 [exp]	0	1
AT3G03220		ATHEXPALPHA1.22...	EXPANSIN 13, expansin A13 (.1)		Lus10027304 [exp]	1.0	0.9393
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10042113 [exp]	2.4	0.8998
AT5G05520			Outer membrane OMP85 family pr...		Lus10007514 [exp]	3.5	0.9239
AT3G15380			Plasma-membrane choline transp...		Lus10036620 [exp]	4.2	0.8913
AT5G09995			unknown protein		Lus10016816 [exp]	5.7	0.8988
AT1G75640			Leucine-rich receptor-like pro...		Lus10033924 [exp]	6.7	0.9171
AT2G02480		STI	STICHEL, AAA-type ATPase famil...		Lus10026270 [exp]	8.1	0.9055
AT3G60410			Protein of unknown function (D...		Lus10007850 [exp]	8.5	0.8603
AT4G27585			SPFH/Band 7/PHB domain-contain...		Lus10032909 [exp]	8.9	0.8943
AT5G28740			Tetratricopeptide repeat (TPR)...		Lus10041573 [exp]	9.5	0.8977

Compare expression of checked genes

Lus10029176 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.