Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60070 1316 / 0 Adaptor protein complex AP-1, gamma subunit (.1.2) AT1G23900 1257 / 0 GAMMA-ADAPTIN 1, GAMMA-AD, GAMMA-ADR, GAMMA-ADAPTIN1 gamma-adaptin 1 (.1.2) AT1G23940 410 / 2e-134 ARM repeat superfamily protein (.1) AT5G22770 275 / 7e-79 ALPHA-ADR alpha-adaptin (.1.2.3) AT5G22780 275 / 8e-79 Adaptor protein complex AP-2, alpha subunit (.1) AT1G31730 219 / 1e-59 Adaptin family protein (.1) AT1G48760 114 / 8e-26 PAT4, DELTA-ADR PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012988 [exp] 1584 / 0 AT1G60070 1397 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Lus10030640 [exp] 1401 / 0 AT1G60070 1322 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Lus10030848 [exp] 1356 / 0 AT1G60070 1288 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Lus10005371 [exp] 273 / 4e-78 AT5G22780 1679 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Lus10020522 [exp] 271 / 2e-77 AT5G22780 1689 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Lus10019520 [exp] 267 / 1e-75 AT5G22780 1672 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Lus10043363 [exp] 266 / 2e-75 AT5G22780 1659 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Lus10037271 [exp] 213 / 1e-57 AT1G31730 1278 / 0.0 Adaptin family protein (.1) Lus10035684 [exp] 211 / 5e-57 AT1G31730 1312 / 0.0 Adaptin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G092800 [exp] 1376 / 0 AT1G60070 1356 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Potri.016G104700 [exp] 1366 / 0 AT1G60070 1329 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Potri.004G189700 [exp] 275 / 7e-79 AT5G22770 1659 / 0.0 alpha-adaptin (.1.2.3) Potri.009G150300 [exp] 271 / 2e-77 AT5G22780 1640 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Potri.004G235200 [exp] 223 / 7e-61 AT1G31730 1392 / 0.0 Adaptin family protein (.1) Potri.012G055000 [exp] 112 / 3e-25 AT1G48760 815 / 0.0 PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3) Potri.015G045600 [exp] 99 / 4e-21 AT1G48760 870 / 0.0 PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01602 [flax] [poplar] Adaptin_N Adaptin N terminal region CL0159 [flax] [poplar] E-set PF02883 [flax] [poplar] Alpha_adaptinC2 Adaptin C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10029177 pacid=23151843 polypeptide=Lus10029177 locus=Lus10029177.g ID=Lus10029177.BGIv1.0 annot-version=v1.0 ATGATCAGGGCAATACGTGCTTGCAAAACTGCTGCAGAAGAGCGGGCAGTTGTCAGAAAAGAGTGTGCTGCTATTCGTGCTTCAATTAATGATAACGATA ATGACTACAGACATCGTAACCTGGCTAAGCTCATGTTTATTCACATGCTTGGATATCCAACGCATTTTGGGCAAATGGAGTGCTTGAAATTAATTGCATC ACCGGGATTTCCTGAGAAGAGAATAGGATATCTTGGTTTGATGCTGCTTCTCGATGAAAGACAGGAAGTACTAATGTTGGTCACAAACTCCGTAAAACAA GATCTTAATCACACAAACCAGTACATCGTGGGGCTTGCTCTTTGTGCTTTGGGGAATATTTGTTCCGCAGAAATGGCCCGTGATCTGGCTCCAGAAGTAG AAAGATTGCTGCAATTTCGAGATCCAAACATTCGGAAAAAAGCAGCATTGTGCTCTGTAAGGATTATAAAGAAAGTCCCAGATCTGGCAGAAAATTTCAT TAATCCTGTTGCAGCTTTACTTAAAGAAAAGCATCATGGAGTCTTAATAACAGGAGTTCAACTATGTACAGATCTTTGTAAAGTCAGTCCCGAGGCGCTG GAATATTTTAGAAAGAAATGCACTGATGGATTGGTCAGGACTTTACGAGATCTTGTGAATAGCCCATATGCACCAGAGTATGACATTGCTGGAATCACAG ACCCGTTTCTTCATATTAGATTGCTCAGGCTCTTGCGTGTGCTAGGCCATGGAGATGCTGATGCTAGTGATGTTATGAATGACATACTTGCTCAGGTGGC AACGAAGACCGAGTCAAACAAGAATGCCGGAAATGCTATTTTGTATGAATGCGTTGAAACCATCATGAGCATTGAAGACAATGGTGGCTTGCGAGTCCTT GCTATTAATATCCTTGGAAGATTTTTGTCAAACCGTGACAACAATATCAGATATGTTGCTTTAAACATGCTGATGAGGGCTATATCTGTAGATGCTCAAG CAGTGCAAAGGCATCGTGCAACAATTTTGGAGTGTGTAAAGGATTTAGATGCATCAATTAGGAAAAGAGCACTGGAACTGGTGTACCTCTTGGTCAATGA AAGCAATGTAAAACCTTTGACTAAAGAATTAGTTGAGTACTTGGAAGTTAGTGATCAAGATTTTAAAGGAGATCTGACTGCCAGAATTTGCTCCATCATT GAAAAGTATTCGCCCGAGAAAATTTGGTATATCGATCAGATGCTCAAGGTTCTAACAGAGGCTGGGAACTTTGTAAAAGATGAAGTATGGCATGCCCTAG TTGTTGTCATCAGCAATGCTTTAGACCTCCATGGATATACAGTGAGAGCTTTGTACAGATCATTCCAGACGTCAGCAGAACAGGAAACCCTTGTCCGAGT GGCAGTCTGGTGCATAGGAGAATATGGTGACTTGTTGGTCAATAACGCTGGAATGCTTAATGTAGAAGACCCTATTACAGTAACAGAATCTGATGCTGTT GATGTTGTTGAGAATGCATTAAAACGTCATGCCTCTGATCTTACAACCAAAGCAATGGCATTGATTGCTCTATTGAAGCTATCTTCCCGTTTTCCATCTT GTTCAGGGAGGATCAAGGACATAGTTTCCCAAAATAAAGGAAACCTTGTGCTTGAGTTGCAGCAGAGATCCCTCGAGTTCAACTCGATAATTGAGAAGCA TCAGAACATAAGGTCTGCTCTTGTCGAGCGGATGCCAGTTCTGGATGAAGCTACCTTTGGCGGAAGAAGAGCTAGCTCACTACCAAGTACCGGTTCAACT TCCACCGGTACTGAAGTGAAACTTCCAAACGGAGTTGCGAAACCCTCTGCAGCTCCTCTAGTAGATCTGCTCGATCTTTCTGACGATGCACCCGCCCCTA GTTCTTCCGGCGGCGATTTCCTTCAGGATCTACTTGGTGTGGATTTAGCACCTGGAACACTATCAGGCACAAGTCAGGCACCAAAGGCGGGAACGGATGT GCTATTAGATCTGTTGTCTATCGGCTCCACACCTGATATTTTATCGTCAGCTCAAGAGAATAAACCTGCAGTTGCCTCGTTAGATTTGCTAGCAACTCCT CCCCCTGCACATGCCGCTTCTTCCACAGCTTCAAATATGATGGATTTGTTGGATGGCTTTACTCGAGCTTCACCAAAGCCTGCCGACAACGGTCCAGCTT ATCCACCTATAGTCGCGTTCGAGAGCAGCACGTTGCGACTAACCTTCAACTTCTCGAAGCAACCTGCGAACCCCCAGACGACGACAATTTCTGCCACTTT CACAAACTTGTCCAGTAACATCTTAACAGACTTTGTTTTCCAGGCTGCAGTTCCGAAGTTTCTGCAACTGAACTTAGACCCGGCTAGTGGTAACAGCCTA CCCGCAAGTGGCAATGGGACCATCACACAGACTTTGAAAGTCACAAACAGTCAACACGGGAAGAAACCGCTCGTGATGCGTATAAGGATAGCATACAAGA ACGAGAATAAAGACGTGCTGGAGGAAGGACAGATCAACAACTTCCCCCAAAACTTGTGA
AA sequence Show only first row Show all	>Lus10029177 pacid=23151843 polypeptide=Lus10029177 locus=Lus10029177.g ID=Lus10029177.BGIv1.0 annot-version=v1.0 MIRAIRACKTAAEERAVVRKECAAIRASINDNDNDYRHRNLAKLMFIHMLGYPTHFGQMECLKLIASPGFPEKRIGYLGLMLLLDERQEVLMLVTNSVKQ DLNHTNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKAALCSVRIIKKVPDLAENFINPVAALLKEKHHGVLITGVQLCTDLCKVSPEAL EYFRKKCTDGLVRTLRDLVNSPYAPEYDIAGITDPFLHIRLLRLLRVLGHGDADASDVMNDILAQVATKTESNKNAGNAILYECVETIMSIEDNGGLRVL AINILGRFLSNRDNNIRYVALNMLMRAISVDAQAVQRHRATILECVKDLDASIRKRALELVYLLVNESNVKPLTKELVEYLEVSDQDFKGDLTARICSII EKYSPEKIWYIDQMLKVLTEAGNFVKDEVWHALVVVISNALDLHGYTVRALYRSFQTSAEQETLVRVAVWCIGEYGDLLVNNAGMLNVEDPITVTESDAV DVVENALKRHASDLTTKAMALIALLKLSSRFPSCSGRIKDIVSQNKGNLVLELQQRSLEFNSIIEKHQNIRSALVERMPVLDEATFGGRRASSLPSTGST STGTEVKLPNGVAKPSAAPLVDLLDLSDDAPAPSSSGGDFLQDLLGVDLAPGTLSGTSQAPKAGTDVLLDLLSIGSTPDILSSAQENKPAVASLDLLATP PPAHAASSTASNMMDLLDGFTRASPKPADNGPAYPPIVAFESSTLRLTFNFSKQPANPQTTTISATFTNLSSNILTDFVFQAAVPKFLQLNLDPASGNSL PASGNGTITQTLKVTNSQHGKKPLVMRIRIAYKNENKDVLEEGQINNFPQNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60070			Adaptor protein complex AP-1, ...		Lus10029177 [exp]	0	1
AT3G08530			Clathrin, heavy chain (.1)		Lus10028976 [exp]	1.7	0.9644
AT3G59770		AtSAC9, SAC9	ARABIDOPSIS THALIANA SUPPRESSO...		Lus10043474 [exp]	2.0	0.9569
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Lus10037962 [exp]	3.5	0.9544
AT5G54440		CLUB, AtTRS130	CLUB (.1)		Lus10021680 [exp]	3.5	0.9560
AT2G45540			WD-40 repeat family protein / ...		Lus10015858 [exp]	3.9	0.9502
AT4G19490		ATVPS54	ARABIDOPSIS THALIANA VPS54 HOM...		Lus10023394 [exp]	4.0	0.9442
AT2G23093			Major facilitator superfamily ...		Lus10011083 [exp]	6.1	0.9055
AT5G22780			Adaptor protein complex AP-2, ...		Lus10005371 [exp]	6.3	0.9424
AT3G60860			SEC7-like guanine nucleotide e...		Lus10009300 [exp]	6.5	0.9496
AT4G30160		ATVLN4, VLN4	villin 4 (.1.2)		Lus10025461 [exp]	7.3	0.9256

Compare expression of checked genes

Lus10029177 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.