Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40250 237 / 3e-75 RING/U-box superfamily protein (.1) AT1G23980 231 / 5e-73 RING/U-box superfamily protein (.1) AT3G48030 158 / 4e-45 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein (.1) AT2G18650 152 / 4e-42 MEE16 maternal effect embryo arrest 16, RING/U-box superfamily protein (.1) AT4G30400 142 / 5e-38 RING/U-box superfamily protein (.1) AT5G57750 109 / 3e-28 RING/U-box superfamily protein (.1) AT3G60220 96 / 5e-22 ATL4 TOXICOS EN LEVADURA 4 (.1) AT4G40070 94 / 2e-21 RING/U-box superfamily protein (.1) AT2G20030 94 / 3e-21 RING/U-box superfamily protein (.1) AT5G05810 92 / 8e-21 ATL43 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012987 [exp] 583 / 0 AT5G40250 302 / 7e-101 RING/U-box superfamily protein (.1) Lus10014526 [exp] 237 / 3e-75 AT5G40250 423 / 6e-148 RING/U-box superfamily protein (.1) Lus10032161 [exp] 229 / 7e-72 AT5G40250 413 / 7e-144 RING/U-box superfamily protein (.1) Lus10019973 [exp] 150 / 1e-41 AT4G30400 252 / 4e-80 RING/U-box superfamily protein (.1) Lus10015502 [exp] 149 / 2e-41 AT4G30400 251 / 1e-79 RING/U-box superfamily protein (.1) Lus10036466 [exp] 97 / 3e-22 AT1G72200 186 / 6e-55 RING/U-box superfamily protein (.1) Lus10023617 [exp] 97 / 3e-22 AT5G05810 219 / 1e-68 RING/U-box superfamily protein (.1) Lus10041134 [exp] 96 / 6e-22 AT1G72200 182 / 3e-54 RING/U-box superfamily protein (.1) Lus10031515 [exp] 95 / 6e-22 AT3G05200 232 / 1e-73 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G072300 [exp] 260 / 2e-84 AT5G40250 372 / 7e-128 RING/U-box superfamily protein (.1) Potri.001G351466 [exp] 254 / 4e-82 AT5G40250 355 / 2e-121 RING/U-box superfamily protein (.1) Potri.012G078200 [exp] 233 / 7e-74 AT5G40250 241 / 1e-76 RING/U-box superfamily protein (.1) Potri.015G073600 [exp] 216 / 6e-67 AT5G40250 259 / 1e-83 RING/U-box superfamily protein (.1) Potri.018G098500 [exp] 152 / 8e-42 AT4G30400 339 / 7e-112 RING/U-box superfamily protein (.1) Potri.006G176700 [exp] 138 / 1e-36 AT4G30400 304 / 3e-98 RING/U-box superfamily protein (.1) Potri.015G056800 [exp] 96 / 1e-21 AT5G05810 263 / 8e-85 RING/U-box superfamily protein (.1) Potri.018G085001 [exp] 96 / 1e-21 AT4G28890 290 / 2e-94 RING/U-box superfamily protein (.1) Potri.005G160900 [exp] 95 / 2e-21 AT1G22500 203 / 5e-61 Arabidopsis thaliana Arabidopsis toxicos en levadura 15, RING/U-box superfamily protein (.1) Potri.018G042501 [exp] 94 / 5e-21 AT2G20030 244 / 2e-77 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10029178 pacid=23151745 polypeptide=Lus10029178 locus=Lus10029178.g ID=Lus10029178.BGIv1.0 annot-version=v1.0 ATGGTGATGCATTGGGTTTCATCGCCATCTCCTTCTGATCCCTTGCCATACAATGGCGATTATCTTAAACAATCTTCTTCAGGTGGAAAAATCAGTCCAG CTATACTGTTCGTCATTATAATCCTAGCAGTACTGTTCTTCATATCAGGTCTCCTCCACTTACTCGTCAGATTCCTCATCAAGCAGAGGGATTCCGGTTC TGACTCGAATCGAAATGGACCGGACATCTCAGTGAACGACACATTCCAAAGGCAGCTACAGCAGCTATTCCATCTCCATGATTCAGGTTTGGATCAAGCC TTCATTGATGCTTTACCTGTGTTTCCTTACAAGGACATTATGGGAATTAAGGAACCCTTTGACTGTGCTGTTTGTCTATGTGAATTCTCTGATAAGGACA AGCTTAGATTGCTCCCTATCTGTAGCCATGCTTTCCATATAGATTGTATAGATGCATGGCTGCTGTCCAATTCCACTTGCCCTATCTGTAGAGGCAGCCT TCATTCGGTCCAATACGAGAATCCAATTTTTTTCGATCCGGAAGATCAAAGGGGGAGGGAAGATGATCAGGTTCAAGGAGTGGAGAGTGCTAGCATTATG AATTCTAGGAGGGTTTTCTCTGTTAGACTTGGCAAGTTTAGGAGTCCTGTTAATGAAGTAGCTCCTGTGGTTGAGAGAAGACAACAGCCGAGAACCCACC AGCCGGTTGGGGAAACAAGTAGCGGTGTGTTGGATGCTCGGAGGTGTTTTTCGATGGGAACGTATCAGTATGTTGTGGCTGATTTGGAGTTGCAGGTGGC ATTGAGCCCTAACAATATCAATAATAGCAGCAGCAGTAGCAACAGAAGAGATGTTGCGGTGAAGAATGCGGTCAAAGGGCGAAATGGACAAATTGAGAAT GATCCTTCTTCTGTTCTTGATGGAAACAGGATTAACATTCGGAGTAAAGGTGAAAGCTTTTCTGTCTCCAAGATATGGCAATGGTCCAGGAAAGGCAATT TGCCGGGTTCTTCTTCTTCTGTTCCTGTTACTGTTGATTTCCCTTGGAATGAACTTAGTAGAACCAAACAGCAATGTACGTAG
AA sequence Show only first row Show all	>Lus10029178 pacid=23151745 polypeptide=Lus10029178 locus=Lus10029178.g ID=Lus10029178.BGIv1.0 annot-version=v1.0 MVMHWVSSPSPSDPLPYNGDYLKQSSSGGKISPAILFVIIILAVLFFISGLLHLLVRFLIKQRDSGSDSNRNGPDISVNDTFQRQLQQLFHLHDSGLDQA FIDALPVFPYKDIMGIKEPFDCAVCLCEFSDKDKLRLLPICSHAFHIDCIDAWLLSNSTCPICRGSLHSVQYENPIFFDPEDQRGREDDQVQGVESASIM NSRRVFSVRLGKFRSPVNEVAPVVERRQQPRTHQPVGETSSGVLDARRCFSMGTYQYVVADLELQVALSPNNINNSSSSSNRRDVAVKNAVKGRNGQIEN DPSSVLDGNRINIRSKGESFSVSKIWQWSRKGNLPGSSSSVPVTVDFPWNELSRTKQQCT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40250			RING/U-box superfamily protein...		Lus10029178 [exp]	0	1
AT1G07090		LSH6	LIGHT SENSITIVE HYPOCOTYLS 6, ...		Lus10038424 [exp]	4.0	0.8512
AT3G25130			unknown protein		Lus10022768 [exp]	4.2	0.8396
AT4G34215			Domain of unknown function (DU...		Lus10014097 [exp]	11.0	0.8085
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Lus10029513 [exp]	13.1	0.8462
AT5G24240			Phosphatidylinositol 3- and 4-...		Lus10018104 [exp]	20.5	0.8065
AT1G20450		LTI45, ERD10, L...	LOW TEMPERATURE INDUCED 45, LO...		Lus10034568 [exp]	21.4	0.8132
AT5G54540			Uncharacterised conserved prot...		Lus10014803 [exp]	22.9	0.8171
AT3G17020			Adenine nucleotide alpha hydro...		Lus10037761 [exp]	23.3	0.8167
AT5G37980			Zinc-binding dehydrogenase fam...		Lus10004380 [exp]	24.1	0.8263
AT3G05675			BTB/POZ domain-containing prot...		Lus10033220 [exp]	24.6	0.8103

Compare expression of checked genes

Lus10029178 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.