Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60060 367 / 1e-125 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) AT5G53900 128 / 1e-33 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) AT3G15240 127 / 4e-33 Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) AT2G31280 72 / 1e-13 bHLH bHLH155 ,CPuORF7 conserved peptide upstream open reading frame 7 (.1.2.3.4) AT1G06150 72 / 2e-13 bHLH bHLH089, EMB1444 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G27230 52 / 6e-07 bHLH LHW, bHLH156 LONESOME HIGHWAY, transcription factor-related (.1.2) AT5G24352 44 / 7e-06 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) AT1G64625 45 / 5e-05 bHLH bHLH157 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2), Serine/threonine-protein kinase WNK (With No Lysine)-related (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012986 [exp] 516 / 0 AT1G60060 428 / 8e-150 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) Lus10024800 [exp] 202 / 5e-62 AT1G60060 221 / 8e-70 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) Lus10018736 [exp] 199 / 7e-61 AT1G60060 220 / 4e-69 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) Lus10041936 [exp] 118 / 2e-29 AT5G53900 419 / 7e-146 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) Lus10005549 [exp] 106 / 4e-25 AT5G53900 410 / 7e-142 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) Lus10033880 [exp] 61 / 7e-10 AT2G31280 481 / 7e-160 conserved peptide upstream open reading frame 7 (.1.2.3.4) Lus10033222 [exp] 48 / 1e-05 AT1G64625 211 / 2e-60 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2), Serine/threonine-protein kinase WNK (With No Lysine)-related (.3) Lus10001527 [exp] 48 / 1e-05 AT1G64625 216 / 5e-62 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2), Serine/threonine-protein kinase WNK (With No Lysine)-related (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G096400 [exp] 374 / 9e-129 AT1G60060 459 / 4e-162 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) Potri.014G024000 [exp] 238 / 3e-75 AT1G60060 243 / 4e-77 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) Potri.001G397800 [exp] 127 / 7e-33 AT5G53900 439 / 1e-153 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) Potri.011G116400 [exp] 127 / 7e-33 AT5G53900 438 / 3e-153 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) Potri.005G222500 [exp] 67 / 7e-12 AT2G31280 568 / 0.0 conserved peptide upstream open reading frame 7 (.1.2.3.4) Potri.002G040600 [exp] 64 / 7e-11 AT2G31280 437 / 7e-144 conserved peptide upstream open reading frame 7 (.1.2.3.4) Potri.006G090000 [exp] 64 / 7e-11 AT1G06150 195 / 6e-53 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.003G144900 [exp] 61 / 1e-09 AT2G27230 233 / 2e-66 LONESOME HIGHWAY, transcription factor-related (.1.2) Potri.001G086000 [exp] 58 / 7e-09 AT2G27230 248 / 7e-72 LONESOME HIGHWAY, transcription factor-related (.1.2) Potri.009G017700 [exp] 50 / 3e-06 AT2G27230 355 / 2e-110 LONESOME HIGHWAY, transcription factor-related (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029179 pacid=23151816 polypeptide=Lus10029179 locus=Lus10029179.g ID=Lus10029179.BGIv1.0 annot-version=v1.0 ATGGAAGAACATCTAAGCCCATTAGCAATCACACATCTCCTTCAGCACACTCTGAGGAGCTTGTGCATCCATGAAAACTCCCAGTGGGTTTATGCTGTTT TCTGGCGGATCTTGCCCAGAAACTACCCTCCCCCCAAATGGGATAGCCAAGGTGCTTATGACAGGTCCAGAGGCAACAGGAGGAACTGGATTCTGGTTTG GGAAGATGGGTTCTGCAATTTCGCAACCGCGGCATCAGCAGATCATGCCACGAACACCACCACCAACTCATCATCCAACGGAGGTGATCAGTTTCAGGGG CATTATGGTCATCATCAGCATCAGCAAGGGCTTCAGCCTGAGCTGTTCTTCAAGATGTCCCATGAAATCTACAACTATGGAGAAGGATTGATAGGGAAAG TAGCGGCGGATCTTAGCCATAAGTGGATATACAAAGAACCCAATGAGCAAGAGATCAACTTCTTGTCTGCTTGGCATAACTCTGTTGATTCTCAACCAAG GACATGGGAAGCTCAGTTCCAGTCCGGTATCAAGACCATAGCCTTGATCGCGGTCCGAGAAGGCGTGGTGCAACTCGGAGCAATCAACAAGGTGGTAGAA GACTTGAGCTATGTGGTACTACTAAGGAAGAAGTTCGGCTACATAGAGAGCATCCCAGGAGTGCTCTTGCCACACCCTTCATCCTCATCATGCCCACCTT CGATCCTCCCGTTTCGAATCGACCCGTTTGGAAACCCGATCCTCCCTCCGCCACCTCATCACCAATCTTGGAACCACTACCAGGGTGGCGGGGGCGGCGG CGGTCCGGAATACTACGACCAAGTTCCACCGCCGCCGTACAAGCAGATGGTAACTCCTTCGATGAGTAGCCTCGAAGCCTTGCTCTCCAAGCTCCCTTCT GTGGTCCCACCCGGCCATCACCCCCATCATCATCATCTGAAGGAGGAGACGACTACTACAACGGCTGAGGAAGACGGTGGCCGGCGTGATGACGTGGCGG CGGCGGGAGAGAGTAGTAGCTCGATGTCGGGATATGGCAGAAGTGGTAATAATGGTCAACTTGAGTTTCATCTTCACCACCATGATTTGAACGTGAATTG TAGCGCCGCCAATAATGGGTATTTCGAGTGA
AA sequence Show only first row Show all	>Lus10029179 pacid=23151816 polypeptide=Lus10029179 locus=Lus10029179.g ID=Lus10029179.BGIv1.0 annot-version=v1.0 MEEHLSPLAITHLLQHTLRSLCIHENSQWVYAVFWRILPRNYPPPKWDSQGAYDRSRGNRRNWILVWEDGFCNFATAASADHATNTTTNSSSNGGDQFQG HYGHHQHQQGLQPELFFKMSHEIYNYGEGLIGKVAADLSHKWIYKEPNEQEINFLSAWHNSVDSQPRTWEAQFQSGIKTIALIAVREGVVQLGAINKVVE DLSYVVLLRKKFGYIESIPGVLLPHPSSSSCPPSILPFRIDPFGNPILPPPPHHQSWNHYQGGGGGGGPEYYDQVPPPPYKQMVTPSMSSLEALLSKLPS VVPPGHHPHHHHLKEETTTTTAEEDGGRRDDVAAAGESSSSMSGYGRSGNNGQLEFHLHHHDLNVNCSAANNGYFE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60060			Serine/threonine-protein kinas...		Lus10029179 [exp]	0	1
AT1G60060			Serine/threonine-protein kinas...		Lus10012986 [exp]	2.0	0.9297
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10019898 [exp]	4.2	0.9081
AT3G63430			unknown protein		Lus10003090 [exp]	4.2	0.9040
AT2G18360			alpha/beta-Hydrolases superfam...		Lus10025873 [exp]	4.7	0.8801
AT2G32990		ATGH9B8	glycosyl hydrolase 9B8 (.1)		Lus10030008 [exp]	6.0	0.8975
AT5G50150			Protein of Unknown Function (D...		Lus10039949 [exp]	6.7	0.8972
AT2G27035		AtENODL20	early nodulin-like protein 20 ...		Lus10005229 [exp]	8.1	0.8932
AT5G52600	MYB	AtMYB82	myb domain protein 82 (.1)		Lus10006647 [exp]	8.5	0.8894
AT5G23720		PHS1	PROPYZAMIDE-HYPERSENSITIVE 1, ...		Lus10032545 [exp]	8.5	0.8857
					Lus10015658 [exp]	9.2	0.8904

Compare expression of checked genes

Lus10029179 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.