Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28050 196 / 5e-60 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G40240 181 / 3e-54 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT5G40230 177 / 7e-53 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G15540 169 / 4e-50 EamA-like transporter family (.1) AT5G40210 158 / 1e-45 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G28130 151 / 7e-44 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT3G28070 146 / 5e-42 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT3G28100 147 / 1e-41 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G18200 143 / 7e-40 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT3G28080 138 / 3e-38 nodulin MtN21 /EamA-like transporter family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010695 [exp] 469 / 8e-168 AT3G28050 280 / 3e-92 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039425 [exp] 201 / 6e-62 AT3G28050 453 / 4e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039479 [exp] 190 / 2e-57 AT3G28050 457 / 1e-161 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039428 [exp] 172 / 5e-51 AT3G28050 343 / 2e-117 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039478 [exp] 170 / 6e-50 AT3G28050 385 / 2e-133 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039429 [exp] 168 / 1e-48 AT3G28050 354 / 6e-120 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039481 [exp] 160 / 1e-46 AT5G40240 265 / 2e-86 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10034877 [exp] 157 / 3e-45 AT5G40230 207 / 3e-64 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10030842 [exp] 156 / 7e-45 AT3G28050 244 / 1e-78 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G145800 [exp] 343 / 1e-117 AT3G28050 283 / 2e-93 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G032100 [exp] 291 / 4e-97 AT3G28050 224 / 3e-70 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.003G192900 [exp] 286 / 3e-95 AT3G28050 222 / 1e-69 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.015G073200 [exp] 218 / 8e-69 AT5G40240 254 / 4e-82 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.001G337100 [exp] 211 / 7e-66 AT3G28050 367 / 4e-126 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G040200 [exp] 142 / 1e-39 AT1G44800 261 / 1e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G233600 [exp] 141 / 6e-39 AT1G75500 584 / 0.0 Walls Are Thin 1 (.1.2) Potri.015G042900 [exp] 138 / 5e-38 AT3G18200 476 / 4e-169 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.001G453000 [exp] 137 / 1e-37 AT3G30340 369 / 4e-127 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.011G149000 [exp] 136 / 3e-37 AT3G30340 369 / 7e-127 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029180 pacid=23151714 polypeptide=Lus10029180 locus=Lus10029180.g ID=Lus10029180.BGIv1.0 annot-version=v1.0 ATGAAGGTTGCAGGTCCGTTTGTAGGGATGATGATGGCGGAGTGTGCACAAGTTGGGCTAATGATCGTCAGCAAACAAGTCATGTCACAAGGGATGATCA GCTTCATCTTCGTCCTCTACTCCAACGCCCTCGCCTCCTTAGTCCTCCTCCCTTCATCTCTAATCCTCCACAGTTTTCCGGCGCAGGCTTTTGGATATGC TGGGATTAACCTGAGTTCTCCTACACTAGCCACGGCAGTGCTAAACCTTGTACCTGGATTCACCTTCGTACTTGCTGTTACTTTCAGGATGGAAAAGCTT GATTGGAGAACCTCTAGTACCATAGCTAAAGCTGCAGGCACTGTTGTATCAATGGCTGGTGCATTCATCATGACATGTTACAATGGCCCTCCGTTGATAG ATTCGACTCCAGATTCGTCGAAACTAGTCCTCTTGCAGTCGAATTGGGCCCTTGAAGGGTCGTTTCTTGCAGTAGACTGTGTTATGGCTTCTTGCTTTGT TATCATACAGGCATTGATCCTGAAGAAGTATCCAGCAGAGCTGATCATTGTATTCTTCTACTGCTTCTTTGTTGCCATTCTGTCCACAGTAGTTTGTTTG GTAATGGAAAGAGACTTTGCTGATTGGAGCTTGAAACCTAGGATAAGGTGGATGAGGCGTCCTCTATTCATTGGTGTTATTGTATGGTGTCTGCACAGGA CAGGGCCGGTTTTCGTGTTGATGTTCAAGCCCATCGGTATCGTGATTGCAGCTTTGGTTGGTGTCATCTGCTTTGGCGATACTCTGTACCTTGGAAGTTT GATTGGAGCAGCATTCATTGTGATTGGATTCTATTTGGTGATATGGGGGGAAGCTAAAGAAGCAGATCATGTAGATGTTAATGTTGCAAAAGCTGAGTTA AGCAGTGAAAAGGCTCCTCTCCTGCCAAGGTACTTGGAATGA
AA sequence Show only first row Show all	>Lus10029180 pacid=23151714 polypeptide=Lus10029180 locus=Lus10029180.g ID=Lus10029180.BGIv1.0 annot-version=v1.0 MKVAGPFVGMMMAECAQVGLMIVSKQVMSQGMISFIFVLYSNALASLVLLPSSLILHSFPAQAFGYAGINLSSPTLATAVLNLVPGFTFVLAVTFRMEKL DWRTSSTIAKAAGTVVSMAGAFIMTCYNGPPLIDSTPDSSKLVLLQSNWALEGSFLAVDCVMASCFVIIQALILKKYPAELIIVFFYCFFVAILSTVVCL VMERDFADWSLKPRIRWMRRPLFIGVIVWCLHRTGPVFVLMFKPIGIVIAALVGVICFGDTLYLGSLIGAAFIVIGFYLVIWGEAKEADHVDVNVAKAEL SSEKAPLLPRYLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10029180 [exp]	0	1
AT4G11170			Disease resistance protein (TI...		Lus10007822 [exp]	7.7	0.8704
AT3G25400			unknown protein		Lus10020407 [exp]	13.8	0.8650
AT3G11260	HD	WOX5B, WOX5	WUSCHEL related homeobox 5B, W...		Lus10040219 [exp]	17.2	0.8726
AT5G53110			RING/U-box superfamily protein...		Lus10032382 [exp]	17.3	0.8975
AT4G32480			Protein of unknown function (D...		Lus10033683 [exp]	18.7	0.8805
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10039830 [exp]	27.4	0.8788
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Lus10032514 [exp]	27.9	0.8454
AT1G48635		PEX3-2, PEX3	PEROXIN 3-2, peroxin 3 (.1.2)		Lus10018002 [exp]	45.3	0.8603
AT4G12410			SAUR-like auxin-responsive pro...		Lus10024600 [exp]	45.7	0.8491
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022195 [exp]	63.7	0.8669

Compare expression of checked genes

Lus10029180 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.