Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010697 [exp] 271 / 2e-89 ND / Lus10029831 [exp] 250 / 2e-79 ND / Lus10042237 [exp] 187 / 2e-51 AT4G27595 44 / 5e-04 Plant protein of unknown function (DUF827) (.1) Lus10004306 [exp] 174 / 2e-49 ND / Lus10026417 [exp] 174 / 4e-48 ND / Lus10026416 [exp] 170 / 1e-47 AT5G52410 42 / 0.001 unknown protein Lus10019691 [exp] 172 / 3e-47 ND / Lus10019211 [exp] 165 / 1e-45 ND / Lus10016424 [exp] 164 / 2e-44 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029181 pacid=23151869 polypeptide=Lus10029181 locus=Lus10029181.g ID=Lus10029181.BGIv1.0 annot-version=v1.0 ATGGCTCCCTTCGATTTCAAGTCAGACATGCATTTCGTCGCTTCATCCGACAAACTCACCCTCCATGTCTACCAGCTCAACAAGAGCGCCAACCCAAGTT CTATCCGGAAGGCTCATTGGTCAGAAGTTGCCATCATCGTTCCTGGTCGCGACGATAACGACGATGATTACAGTGGACTCGTGTTCTTTGATGGCCACGG CGAGATCCAAGAACCAGCTGCGTTGACCAAGTTGGCACAAGAACTCACTCGGTTGCGGTTAATGGTCAGTCCAGAAGGATATTGTTACCAAGATGTTTCG GAGTTTGGCGAGCTTAAAGACTTTGGGATTCACTACCTCCGTCTCAATGATACCTTCGATTGGTCACACCACGGCGTTGACCTTGCCACCACCACTGTCT GGCGCCGTTCCAAATTGAGGTACCATGTGCCGAAGCAAACGAAGCAAGTAGGTGGAGGATCAGTGAGTAAGGACAAGTACGAGGAGTTAAAAAAGCTGCT GAAAGAAAAGGAAGAGGAATTAGAAAAGGTTACCGAGGAGAAAGATGACGCAGAAGAAGAATTGCAGAGGTTGAAGGAAGTGAAACAGAGTGAAATGGAA GAGTTGAAGAATGAGAAGGATAAAGAACTGCGGAAGCTGAAAAGGGAAAGGGATCGTGCGGTACAAAAGAAGGAGGAAGAATTACAAAGGTTAAGGAAGG AGAACGAGGAACTGCGAAAGCTGAGAGAAGAAAAGGATGATAAGAATGATGACGACGACGATAATTGTGATACTAGGAGAGTTGATGAGATCAAGCTGAT CAGGGAAGAAAAGGATGAAGAGTTACGGAAGCTTGGCAAGGAGAAAGATGACGAGATGGCGAAGTTAGTGAAGGAGAAGGATGAGGAACTACGAAAGGCA CGGACAAGAATGGAGGAAGAAGCTCTGCACGAAATGGACAAGTTAAAGAAGGAGAAGGAGGAGGAACTGCAAAAATTGAAGAGTCAAAGTTTGAAAACAG AGGCCGATCTGCAACAGAAACTGGAAATTTGCATTCAGCGTTCGTGGTCGATCTCGATCATACCGAACAGAAGAAATCTGTTCCCAGAGTCTAGCCACGA AGAAAAGAAGCAATTCCATCTAACAACTAGGCGTCCGATGCCGCCAGAGACATTTGAAGTTGTTACCGTTGGCCCGATTGATATGCAGATGAAGAGGCAT TATACGCCGGAGATCAAAGATGGGAGCAACCGCCTCCTATTCGAAACTTACGAAATAGCGGAGAATGAGAAGCTGGAGACCACAGCGTTGTGGCCTGCTC CGCCTAAGGTAGACATCGGTACCAGCGATGGCAAATTCGACACGAGGAATTGGTGGTTTGCCAAGTTCTCTGCCCCTGAAGGAGGATTGACGATGGTGGC TTACTACGACGGGAATTTCAACAGCGTTATGGTTTCGAGTAGTACGTTTAGTCAGCCTACAATCCCCTTGCCGTATTCCAAGCACGCCGCCTTTTGTCCC TTTGGTCGGACCTTCGTCCTTGGGGGCCTCCCCGTGGGAATGAGGCTTGCTTTTGTTTACCGTGACTAA
AA sequence Show only first row Show all	>Lus10029181 pacid=23151869 polypeptide=Lus10029181 locus=Lus10029181.g ID=Lus10029181.BGIv1.0 annot-version=v1.0 MAPFDFKSDMHFVASSDKLTLHVYQLNKSANPSSIRKAHWSEVAIIVPGRDDNDDDYSGLVFFDGHGEIQEPAALTKLAQELTRLRLMVSPEGYCYQDVS EFGELKDFGIHYLRLNDTFDWSHHGVDLATTTVWRRSKLRYHVPKQTKQVGGGSVSKDKYEELKKLLKEKEEELEKVTEEKDDAEEELQRLKEVKQSEME ELKNEKDKELRKLKRERDRAVQKKEEELQRLRKENEELRKLREEKDDKNDDDDDNCDTRRVDEIKLIREEKDEELRKLGKEKDDEMAKLVKEKDEELRKA RTRMEEEALHEMDKLKKEKEEELQKLKSQSLKTEADLQQKLEICIQRSWSISIIPNRRNLFPESSHEEKKQFHLTTRRPMPPETFEVVTVGPIDMQMKRH YTPEIKDGSNRLLFETYEIAENEKLETTALWPAPPKVDIGTSDGKFDTRNWWFAKFSAPEGGLTMVAYYDGNFNSVMVSSSTFSQPTIPLPYSKHAAFCP FGRTFVLGGLPVGMRLAFVYRD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10029181 [exp]	0	1
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10010698 [exp]	3.0	0.8421
					Lus10000478 [exp]	6.8	0.7577
AT4G04450	WRKY	ATWRKY42, WRKY4...	WRKY family transcription fact...		Lus10009969 [exp]	9.6	0.8598
AT1G22990		HIPP22	heavy metal associated isopren...		Lus10036004 [exp]	13.0	0.7936
AT3G21330	bHLH	bHLH087	basic helix-loop-helix (bHLH) ...		Lus10003500 [exp]	16.1	0.7598
AT1G66540			Cytochrome P450 superfamily pr...		Lus10032856 [exp]	18.4	0.8501
AT1G61260			Protein of unknown function (D...		Lus10020090 [exp]	25.9	0.8077
AT5G44440			FAD-binding Berberine family p...		Lus10039682 [exp]	27.8	0.8123
					Lus10000296 [exp]	38.8	0.7325
					Lus10019691 [exp]	45.2	0.7767

Compare expression of checked genes

Lus10029181 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.