Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24020 89 / 4e-21 MLP423 MLP-like protein 423 (.1.2) AT1G70840 50 / 4e-07 MLP31 MLP-like protein 31 (.1) AT1G70850 50 / 9e-07 MLP34 MLP-like protein 34 (.1.2.3) AT1G23120 47 / 3e-06 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT5G28010 46 / 9e-06 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT5G28000 43 / 9e-05 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029184 [exp] 402 / 2e-136 AT1G24020 84 / 1e-18 MLP-like protein 423 (.1.2) Lus10010698 [exp] 292 / 7e-95 AT1G24020 94 / 2e-22 MLP-like protein 423 (.1.2) Lus10029186 [exp] 235 / 7e-69 AT1G24020 78 / 2e-16 MLP-like protein 423 (.1.2) Lus10010702 [exp] 215 / 7e-63 AT1G24020 79 / 4e-17 MLP-like protein 423 (.1.2) Lus10010699 [exp] 131 / 3e-37 AT1G24020 56 / 7e-11 MLP-like protein 423 (.1.2) Lus10010701 [exp] 106 / 6e-27 AT1G24020 80 / 3e-19 MLP-like protein 423 (.1.2) Lus10029185 [exp] 101 / 3e-25 AT1G24020 80 / 2e-19 MLP-like protein 423 (.1.2) Lus10016109 [exp] 98 / 6e-22 ND / Lus10030840 [exp] 91 / 1e-21 AT1G24020 189 / 2e-62 MLP-like protein 423 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G096000 [exp] 82 / 2e-18 AT1G24020 188 / 3e-62 MLP-like protein 423 (.1.2) Potri.004G033000 [exp] 54 / 2e-08 AT1G24020 57 / 1e-10 MLP-like protein 423 (.1.2) Potri.004G032900 [exp] 53 / 3e-08 AT1G24020 59 / 2e-11 MLP-like protein 423 (.1.2) Potri.010G000200 [exp] 52 / 8e-08 AT1G24020 65 / 1e-13 MLP-like protein 423 (.1.2) Potri.008G212100 [exp] 50 / 5e-07 AT1G24020 50 / 6e-08 MLP-like protein 423 (.1.2) Potri.010G000400 [exp] 49 / 1e-06 AT1G24020 66 / 4e-14 MLP-like protein 423 (.1.2) Potri.008G212700 [exp] 47 / 4e-06 AT1G24020 68 / 8e-15 MLP-like protein 423 (.1.2) Potri.008G213446 [exp] 47 / 4e-06 AT1G24020 68 / 8e-15 MLP-like protein 423 (.1.2) Potri.008G213669 [exp] 47 / 4e-06 AT1G24020 68 / 8e-15 MLP-like protein 423 (.1.2) Potri.008G213223 [exp] 44 / 1e-05 AT1G24020 64 / 6e-14 MLP-like protein 423 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF00407 [flax] [poplar] Bet_v_1 Pathogenesis-related protein Bet v 1 family CL0066 [flax] [poplar] Trefoil PF07468 [flax] [poplar] Agglutinin Agglutinin domain
Representative CDS sequence Show only first row Show all	>Lus10029182 pacid=23151769 polypeptide=Lus10029182 locus=Lus10029182.g ID=Lus10029182.BGIv1.0 annot-version=v1.0 ATGAAGTTGCCAAAGTACGTGGTGTTGAAGTCCATGTACAACAACAAGTACCTTAGCTACAGAGACGAACCAGGGAAGGAACATGACGGGTTTCTCCAGT TCTCCGAAGATGATCCCACGAGTCTCTACTCGAAATTCGAGGTCAAGATGTCGACCTCCGAGAAGGGATCCTTCCACCTCATGTGCAGCTTCAACGACAA GTACTTGGTAAGGAAGTCTTCCAGTGAAAACTGGATTCGCGGGTCGAGTAATCAATCCGAGGAGGACAAATCGAAATGGTCGTGCACTCTGTTCAAACCT GTCTTAGTTACTGATCATAATGGCGACCAGAAGTCCATGGTAGTTCGGTTCCTCCACGTCCAGCTCAACCACTACGCTTGCTTGTTCAAGGGCGACCCTA AAGATTGCTTGTACGCTGGTTGGAGTTCACCCAATAAGGAATTGTGCGATGCTTGCTCAGTCATCGATTGGGAGTCCCTTCACGATACCAGGGTTATTCC GAAACGTTTTGGTGATTCCAGCAAGAAGCCGATGCCTCCTACAAAACCAAATCCGGTCCCGGAGAAGAAGCAAGATCCTCTGAAGCCAAAGCCGGTCCAG GAGAAGAAACAGGATCCTCCAAAACCAAAGCCGGTTCCAGAGATGAAACAAACTCCTCCGAAACTAAAGTCGGTCCCAGAGAATACACAAGATCCTCCGA ACCCAAAGGCGGTGGTGCCGGAGAAGAAACAAGATCCTCTGAAACCAAAGCCTTCACCGGGAAAGGAAACAGTGGAAAGTGATCAATTGGATTTCAATGT CATCTCATCTGCAGATAAGTTTTGGGGAGCCGTCTTTGCGTTCACAAAAATATTGCCAAAAGCATTACCTCAAACGTACAAATCTATCAAAATAATGAGG GGGGACGGCTTTAGCCAAGGCTCAATCCACGAGATTTCCTTCACTCAAGGTGATGTCGAGAAGTTGGAGGAGAAAATAGCGTATGTGGATCATGAGACGA AGACGATAACATGGTCCCTTATACAAGGTGGAATGCTGACCCACTACGAGACTTTCAAGATCACTATAACGGTTTCTCCAAAGAAGCGTCGCGACAGGGG ATGCAGGGTGAATTGGAGCTATGTTGGTACCAATCCAAAGCCTGGGTTTGATAAGGATGGCTTAATGAAGTTGTTTCAGAAGACCTTCGAAGCTGTAGAT GATTATCTCGAGGCCAATGAAGCCAGGGATTAG
AA sequence Show only first row Show all	>Lus10029182 pacid=23151769 polypeptide=Lus10029182 locus=Lus10029182.g ID=Lus10029182.BGIv1.0 annot-version=v1.0 MKLPKYVVLKSMYNNKYLSYRDEPGKEHDGFLQFSEDDPTSLYSKFEVKMSTSEKGSFHLMCSFNDKYLVRKSSSENWIRGSSNQSEEDKSKWSCTLFKP VLVTDHNGDQKSMVVRFLHVQLNHYACLFKGDPKDCLYAGWSSPNKELCDACSVIDWESLHDTRVIPKRFGDSSKKPMPPTKPNPVPEKKQDPLKPKPVQ EKKQDPPKPKPVPEMKQTPPKLKSVPENTQDPPNPKAVVPEKKQDPLKPKPSPGKETVESDQLDFNVISSADKFWGAVFAFTKILPKALPQTYKSIKIMR GDGFSQGSIHEISFTQGDVEKLEEKIAYVDHETKTITWSLIQGGMLTHYETFKITITVSPKKRRDRGCRVNWSYVGTNPKPGFDKDGLMKLFQKTFEAVD DYLEANEARD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10029182 [exp]	0	1
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Lus10008110 [exp]	2.6	0.8340
					Lus10030116 [exp]	3.2	0.7972
AT3G15280			unknown protein		Lus10005404 [exp]	3.2	0.8291
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Lus10037004 [exp]	4.0	0.8067
AT1G52540			Protein kinase superfamily pro...		Lus10031673 [exp]	9.0	0.8274
AT5G24090		ATCHIA	chitinase A (.1)		Lus10037984 [exp]	10.2	0.7253
AT1G70780			unknown protein		Lus10009131 [exp]	10.6	0.7789
AT2G44760			Domain of unknown function (DU...		Lus10020744 [exp]	14.1	0.6875
AT5G16770	MYB	ATMYB9	myb domain protein 9 (.1.2)		Lus10011031 [exp]	14.3	0.7947
AT2G47810	CCAAT	NF-YB5	"nuclear factor Y, subunit B5"...		Lus10008383 [exp]	18.4	0.7481

Compare expression of checked genes

Lus10029182 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.