Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24020 86 / 1e-19 MLP423 MLP-like protein 423 (.1.2) AT1G23120 51 / 1e-07 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT5G28010 46 / 1e-05 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT1G70840 45 / 3e-05 MLP31 MLP-like protein 31 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029186 [exp] 463 / 5e-152 AT1G24020 78 / 2e-16 MLP-like protein 423 (.1.2) Lus10029182 [exp] 423 / 2e-144 AT1G24020 88 / 1e-20 MLP-like protein 423 (.1.2) Lus10010698 [exp] 389 / 4e-130 AT1G24020 94 / 2e-22 MLP-like protein 423 (.1.2) Lus10010702 [exp] 264 / 3e-79 AT1G24020 79 / 4e-17 MLP-like protein 423 (.1.2) Lus10010699 [exp] 119 / 7e-32 AT1G24020 56 / 7e-11 MLP-like protein 423 (.1.2) Lus10029185 [exp] 100 / 5e-24 AT1G24020 80 / 2e-19 MLP-like protein 423 (.1.2) Lus10010701 [exp] 99 / 8e-24 AT1G24020 80 / 3e-19 MLP-like protein 423 (.1.2) Lus10016109 [exp] 104 / 1e-23 ND / Lus10025503 [exp] 103 / 4e-23 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G096000 [exp] 74 / 3e-15 AT1G24020 188 / 3e-62 MLP-like protein 423 (.1.2) Potri.004G033000 [exp] 50 / 3e-07 AT1G24020 57 / 1e-10 MLP-like protein 423 (.1.2) Potri.004G032900 [exp] 50 / 7e-07 AT1G24020 59 / 2e-11 MLP-like protein 423 (.1.2) Potri.010G000400 [exp] 49 / 8e-07 AT1G24020 66 / 4e-14 MLP-like protein 423 (.1.2) Potri.011G025966 [exp] 47 / 7e-06 AT1G24020 55 / 7e-10 MLP-like protein 423 (.1.2) Potri.011G025900 [exp] 47 / 7e-06 AT1G24020 55 / 7e-10 MLP-like protein 423 (.1.2) Potri.011G026100 [exp] 47 / 8e-06 AT1G24020 54 / 2e-09 MLP-like protein 423 (.1.2) Potri.011G026200 [exp] 45 / 4e-05 AT1G24020 52 / 1e-08 MLP-like protein 423 (.1.2) Potri.014G152800 [exp] 44 / 8e-05 AT1G24020 54 / 1e-09 MLP-like protein 423 (.1.2) Potri.004G020100 [exp] 44 / 9e-05 AT1G70880 58 / 5e-11 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF00407 [flax] [poplar] Bet_v_1 Pathogenesis-related protein Bet v 1 family CL0066 [flax] [poplar] Trefoil PF07468 [flax] [poplar] Agglutinin Agglutinin domain
Representative CDS sequence Show only first row Show all	>Lus10029184 pacid=23151729 polypeptide=Lus10029184 locus=Lus10029184.g ID=Lus10029184.BGIv1.0 annot-version=v1.0 ATGAAGTTACCAAAGTATGTGGTGTTGAAGTCCATGTACAACAACAAGTACCTTAGCTACAGAGATGAGGAAGCAGGGGAGGATGGTCAGGACGGGTTCA TCCACTTATCCGATCCTGATGCCACGACTCTCCGCTACTCGAAATTCGAGGTCATGGAGTCGAAGTCGAACGCCGAGAAGGGATCCGTCCACCTCAAGTG CAGCTTCAACAACAAGTACCTGGCAAGACAGTCTCCCACTAGCTGGTGGATCACTGCCTCGACCGACCATATCCAAGAGGACCGGTCTGAATGGTCGTGT ACTCTGTTCAAGCCGGTCCTCGTTGATAGCGACGACTATTATAATGACGATGAAAAGTCAACGGCGGTGGTCCGGTTCCATCACGTGGAGCTCAACCACT TTGCTTGCGTCTTCCAAAGCGACGGATCTCCGTTTAGTGATTGTCTGTACGCAGGTAGGGACTCTCCTAACCTAAACTTGTTCGATGCCTTTTCGGTCAT CAAATGGGAATCCCTGTCCCAAACAGGGAATCCCAAACGCGCCAACAAGAAGAAGCAAGTGCTGCCGAAGTTTGTGGTGATCAAGTCGAGGTACAATCGA AAGTACTTGCGTTATAGAAACGAGGAAGGGGAGCAACATGGATTCCTCCAGTTCTCCTTGGAGGACGATAAGGACGCTGCGGTAGCGAACCGGTATGCGA AATTCGAAGTGGAGAAGGCGAAATCGGGGAATGGATTGGTGCATTTGAAATGCTGCCACAACAAAAAGTACTTGGCGAGGTCCGATTCTACTAAGTGGTG GATTAGTGCCGGGGCTGATGAAGTCGACGAAGATGATTCCAAATGGTCGTGTACACTTTTCGAGCCGGTGTTTGTAGATGATTCTACCGCGACAATGGTT CGGTTTAGGCATGTTCAGCTTGGAAGATATGCCTGTTTGTTTAACAGCGACTCGTCGTTTGGGGAATGTTTGTATGCTGGGTGGAAGGATCCGAATCCCA ATCTTCTTGATGTGTGTACAATCATTGACTGGGGAAAGGTACAACAAGAAGATGAGGATGATCATGGTGATGAAGATGCTAAACCAAAGCCGGTGAAGAA TCAAGAAAATGCTAAACCAAAGCCGGCGAAGAATCAAGAAGATGCTAAACCAAAGCCGGGAAAGAATCAAGACGAAGATGCTAAACCGGAGGCGGAAACC AATCAAGAAGAGGCTAAACCAAAGCCGGCGGGGAATAAACAAGAAGATCCTAAACCACAACCTCCACAGAAAAGGGAAGTAAATGAAAGTGACCAAGTGG AGTTCACGGCCATCTCATCACAAGATACGTTCTGGGGAGCCGTCTTTGCATCCACAAAAATACTGCCAAACGCGCTACCTAAAAGGTACAAACCTATCCA CATAATGAGGGGCGACGGGTTCAGCCAGGGCTCGATCCGCGAGATTTCCTTCATTCAAGGTGACGTGGAGAAGTTACAAGAGAAGATAGCATATGTGGAT CATGAGAACAAGACGATAACATGGTCCCTCATACAAGGAGGAATGCTGACCCACTACGACACTTTCAAGATCACTATCAGTGTTTATCCAAAGAAGCGTC GGGACAGGGGATGCAGCGTCAACTGGAGCTACGTTGGTACCAATCCGAAGCCCGGTTTCGATAAGGATGCCTTGATGAAGTTGTTTACGGAAACCTTAAA GACTGTTGATGATTATCTCGAGACCAATGCAGCAAGGGATTAG
AA sequence Show only first row Show all	>Lus10029184 pacid=23151729 polypeptide=Lus10029184 locus=Lus10029184.g ID=Lus10029184.BGIv1.0 annot-version=v1.0 MKLPKYVVLKSMYNNKYLSYRDEEAGEDGQDGFIHLSDPDATTLRYSKFEVMESKSNAEKGSVHLKCSFNNKYLARQSPTSWWITASTDHIQEDRSEWSC TLFKPVLVDSDDYYNDDEKSTAVVRFHHVELNHFACVFQSDGSPFSDCLYAGRDSPNLNLFDAFSVIKWESLSQTGNPKRANKKKQVLPKFVVIKSRYNR KYLRYRNEEGEQHGFLQFSLEDDKDAAVANRYAKFEVEKAKSGNGLVHLKCCHNKKYLARSDSTKWWISAGADEVDEDDSKWSCTLFEPVFVDDSTATMV RFRHVQLGRYACLFNSDSSFGECLYAGWKDPNPNLLDVCTIIDWGKVQQEDEDDHGDEDAKPKPVKNQENAKPKPAKNQEDAKPKPGKNQDEDAKPEAET NQEEAKPKPAGNKQEDPKPQPPQKREVNESDQVEFTAISSQDTFWGAVFASTKILPNALPKRYKPIHIMRGDGFSQGSIREISFIQGDVEKLQEKIAYVD HENKTITWSLIQGGMLTHYDTFKITISVYPKKRRDRGCSVNWSYVGTNPKPGFDKDALMKLFTETLKTVDDYLETNAARD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10029184 [exp]	0	1
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Lus10021992 [exp]	1.0	0.9312
AT4G18050		ABCB9, PGP9	ATP-binding cassette B9, P-gly...		Lus10004583 [exp]	1.4	0.9014
AT5G03455		ACR2, ARATH;CDC...	ARSENATE REDUCTASE 2, Rhodanes...		Lus10014420 [exp]	3.0	0.8984
					Lus10038430 [exp]	3.2	0.8843
AT5G57280		RID2	root initiation defective 2, S...		Lus10015533 [exp]	3.5	0.8844
AT4G04750			Major facilitator superfamily ...		Lus10018957 [exp]	4.2	0.8731
AT5G15240			Transmembrane amino acid trans...		Lus10030683 [exp]	5.5	0.8546
AT1G49570			Peroxidase superfamily protein...		Lus10023858 [exp]	8.5	0.8404
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Lus10021554 [exp]	8.9	0.8312
AT1G52780			Protein of unknown function (D...		Lus10033064 [exp]	9.2	0.7930

Compare expression of checked genes

Lus10029184 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.