Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24020 80 / 3e-19 MLP423 MLP-like protein 423 (.1.2) AT1G70830 45 / 5e-06 MLP28 MLP-like protein 28 (.1.2.3.4.5) AT1G70850 42 / 9e-05 MLP34 MLP-like protein 34 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010701 [exp] 341 / 7e-122 AT1G24020 80 / 3e-19 MLP-like protein 423 (.1.2) Lus10029183 [exp] 229 / 8e-77 AT1G24020 73 / 6e-16 MLP-like protein 423 (.1.2) Lus10010700 [exp] 214 / 1e-71 AT1G24020 74 / 4e-17 MLP-like protein 423 (.1.2) Lus10001042 [exp] 121 / 2e-35 AT1G24020 69 / 5e-15 MLP-like protein 423 (.1.2) Lus10001041 [exp] 116 / 2e-33 AT1G24020 64 / 2e-13 MLP-like protein 423 (.1.2) Lus10000474 [exp] 114 / 1e-32 AT1G24020 64 / 2e-13 MLP-like protein 423 (.1.2) Lus10003451 [exp] 103 / 2e-28 AT1G24020 73 / 7e-17 MLP-like protein 423 (.1.2) Lus10010698 [exp] 103 / 3e-26 AT1G24020 94 / 2e-22 MLP-like protein 423 (.1.2) Lus10029182 [exp] 102 / 8e-26 AT1G24020 88 / 1e-20 MLP-like protein 423 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G096000 [exp] 88 / 2e-22 AT1G24020 188 / 3e-62 MLP-like protein 423 (.1.2) Potri.013G131000 [exp] 47 / 6e-07 AT1G24020 62 / 1e-12 MLP-like protein 423 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF00407 [flax] [poplar] Bet_v_1 Pathogenesis-related protein Bet v 1 family
Representative CDS sequence Show only first row Show all	>Lus10029185 pacid=23151677 polypeptide=Lus10029185 locus=Lus10029185.g ID=Lus10029185.BGIv1.0 annot-version=v1.0 ATGTCGCCCTTGTCAGGATCATCAGCAGGCCGAAACGTGGCCGAACTCAGAATGGCATCGTCGGCCAACGACGTCTGGGGGGCCATCTTCGCATCCACCA CCGTCTTCCCGGAGTTCCTCCCGAAGCTCTACAAAGAAATCAGATCCACCAATGGCGACGGCTACTCTCAGGACTCCATGCGAGAGATCACTTATGGCTA TGACTCAGGTTTTGGAGAAGCAGTGGAGTCGTCGATTGAGGAGATTAAAAAGGTGGACCACGGGAAGATGACTGTGAGCTATTCAGTCACTCACGGGGGG TTCCTCGATCATCACGACACATTCGACACCACCATAAAGGTGACTCCCACGGATGGTAGTAGCCCGAGGGAGCTCGGGTGCATTGCTTCGTGGAGCTGTG ACTACACCGGTGCAACAGGTGGTCTGAGCCCGGAGACGGTTAAGGCGTTTATGCTCAAGACCTTTGAGGGAATGGACAGCCACCTCAAGAATCTAAGGAA GACCTATAAGAGTCCACAATGA
AA sequence Show only first row Show all	>Lus10029185 pacid=23151677 polypeptide=Lus10029185 locus=Lus10029185.g ID=Lus10029185.BGIv1.0 annot-version=v1.0 MSPLSGSSAGRNVAELRMASSANDVWGAIFASTTVFPEFLPKLYKEIRSTNGDGYSQDSMREITYGYDSGFGEAVESSIEEIKKVDHGKMTVSYSVTHGG FLDHHDTFDTTIKVTPTDGSSPRELGCIASWSCDYTGATGGLSPETVKAFMLKTFEGMDSHLKNLRKTYKSPQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10029185 [exp]	0	1
					Lus10035913 [exp]	2.4	0.9085
					Lus10023665 [exp]	6.3	0.8976
AT1G72890			Disease resistance protein (TI...		Lus10019142 [exp]	10.3	0.9108
AT4G10265			Wound-responsive family protei...		Lus10018529 [exp]	12.0	0.9066
AT5G54740		SESA5	seed storage albumin 5 (.1)		Lus10040396 [exp]	15.6	0.8315
					Lus10008051 [exp]	15.9	0.9091
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10014241 [exp]	16.9	0.8586
					Lus10026417 [exp]	23.0	0.8862
AT4G29820		CFIM-25, ATCFIM...	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10027624 [exp]	24.2	0.8996
AT5G38760			Late embryogenesis abundant pr...		Lus10003046 [exp]	32.6	0.8941

Compare expression of checked genes

Lus10029185 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.