Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24030 582 / 0 Protein kinase superfamily protein (.1.2) AT1G20650 285 / 6e-94 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT5G18610 283 / 3e-91 Protein kinase superfamily protein (.1.2) AT5G13160 281 / 3e-91 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT5G02800 277 / 7e-91 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT3G20530 276 / 2e-90 Protein kinase superfamily protein (.1) AT1G76370 273 / 4e-89 Protein kinase superfamily protein (.1) AT1G07870 273 / 9e-89 Protein kinase superfamily protein (.1.2) AT3G24550 279 / 2e-88 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT3G24790 267 / 6e-87 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010703 [exp] 751 / 0 AT1G24030 578 / 0.0 Protein kinase superfamily protein (.1.2) Lus10015756 [exp] 294 / 4e-96 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10011148 [exp] 288 / 6e-95 AT3G20530 560 / 0.0 Protein kinase superfamily protein (.1) Lus10043050 [exp] 286 / 7e-94 AT3G20530 561 / 0.0 Protein kinase superfamily protein (.1) Lus10040050 [exp] 283 / 5e-93 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1) Lus10019621 [exp] 281 / 3e-92 AT3G20530 536 / 0.0 Protein kinase superfamily protein (.1) Lus10012814 [exp] 285 / 4e-92 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2) Lus10033966 [exp] 285 / 5e-92 AT5G18610 805 / 0.0 Protein kinase superfamily protein (.1.2) Lus10019897 [exp] 276 / 3e-90 AT5G02800 533 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G095900 [exp] 639 / 0 AT1G24030 588 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G145900 [exp] 630 / 0 AT1G24030 587 / 0.0 Protein kinase superfamily protein (.1.2) Potri.003G166900 [exp] 292 / 2e-95 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.001G421400 [exp] 288 / 7e-95 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1) Potri.001G060800 [exp] 290 / 9e-95 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.010G021500 [exp] 289 / 9e-94 AT5G18610 779 / 0.0 Protein kinase superfamily protein (.1.2) Potri.011G137000 [exp] 285 / 1e-93 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1) Potri.010G215100 [exp] 285 / 1e-93 AT5G18610 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G205700 [exp] 285 / 7e-92 AT5G18610 783 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G133300 [exp] 279 / 5e-91 AT5G02800 566 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10029187 pacid=23151668 polypeptide=Lus10029187 locus=Lus10029187.g ID=Lus10029187.BGIv1.0 annot-version=v1.0 ATGCCTTTTGGGTTGGTTTCTGCTTGGAACAAGAGGAGGAGAAGCAAGTCTCAGGATCATAGTGATCCCTGGGAATATAGGCCTGTGGAGTACTGGAAGC TGGAAGAGCAACCTCCGAAACCCACCACGAAGAGGCGATATGGATCGTCGGTGTTCACTCTCAAGGAAATGGAGGAGGCTACTTGCTCGTTTGGTGAAGA GAATTTCCTAGGAAAAGGAGGGTTTGGCAGAGTGTACAAAGGAACTTTGCGGTCCGGAGAGGTGGTAGCAGTGAAGAAGATGGAGTTACCATCGTTCAAA GCAGCCGAAGGGGAAAGAGAGTTCCGGGTTGAAGTCGATATCTTGAGCAGACTGGACCATCCGAATTTGGTGTCCTTGATAGGGTATTGTGCTGATGGGA AGCAGAGGTTTCTGGTGTATGAGTACCTCCCAAATGGGAACCTGCAAGATCACCTCAATGGAATCGGGGAAGCGAAGATGGACTGGACACAAAGACTGAA AGTGGCAATTGGAGCCGCAAGGGGACTTGCTTATCTCCATTCATCTTCTGCTGTTGGGATACCAATTGTTCATAGAGACTTCAAATCCACTAATGTGCTT CTCAGTGCCAATTTTGAAGCCAAGATTTCTGATTTTGGGTTGGCTAAGTTGATGCCAGAAGGACAAGAGACATATGTGACTGCTATGGTTCTTGGTACAT TTGGCTATTTCGACCCCGAGTATACATCGGTAGGAAAGCTCACTCTACAAAGCGATGTTTATGCATTCGGAGTTGTTCTTCTCGAGCTGCTGACTGGTCG GAGAGCCGTTGACCTAAACCAGGGACCAACTGACCAAAACCTTGTCCTGCAAGTTAGACACATACTGAATGATCGAAAGAAGCTGAGAAGGGTGATCGAT CCAGACATGAGCCGGAGCTCTTATTCGATGGAATCTGTAGCCATGTTTGCGAATTTGGCATCACGTTGCGTCCGCACAGAAAGCAACGAGAGACCTTCAA TGGCTGAATGTGTGAAAGAGCTCCAAGTGATAATCTACACAAATTCAAAAGGATTGAGCAGCATTGGATTTGGAGGCAACTCATTCAAAATTCTGTCATA A
AA sequence Show only first row Show all	>Lus10029187 pacid=23151668 polypeptide=Lus10029187 locus=Lus10029187.g ID=Lus10029187.BGIv1.0 annot-version=v1.0 MPFGLVSAWNKRRRSKSQDHSDPWEYRPVEYWKLEEQPPKPTTKRRYGSSVFTLKEMEEATCSFGEENFLGKGGFGRVYKGTLRSGEVVAVKKMELPSFK AAEGEREFRVEVDILSRLDHPNLVSLIGYCADGKQRFLVYEYLPNGNLQDHLNGIGEAKMDWTQRLKVAIGAARGLAYLHSSSAVGIPIVHRDFKSTNVL LSANFEAKISDFGLAKLMPEGQETYVTAMVLGTFGYFDPEYTSVGKLTLQSDVYAFGVVLLELLTGRRAVDLNQGPTDQNLVLQVRHILNDRKKLRRVID PDMSRSSYSMESVAMFANLASRCVRTESNERPSMAECVKELQVIIYTNSKGLSSIGFGGNSFKILS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24030			Protein kinase superfamily pro...		Lus10029187 [exp]	0	1
AT1G24030			Protein kinase superfamily pro...		Lus10010703 [exp]	1.4	0.9760
AT1G03900		ABCI18, ATNAP4	ATP-binding cassette I18, non-...		Lus10003544 [exp]	3.5	0.9396
AT3G15480			Protein of unknown function (D...		Lus10043091 [exp]	6.3	0.9388
AT1G29470			S-adenosyl-L-methionine-depend...		Lus10028650 [exp]	9.7	0.8821
AT3G05580		TOPP9	type one protein phosphatase 9...		Lus10015192 [exp]	9.8	0.9133
AT2G35860		FLA16	FASCICLIN-like arabinogalactan...		Lus10021247 [exp]	11.0	0.9305
AT3G16920		ATCTL2	chitinase-like protein 2 (.1)		Lus10016872 [exp]	11.3	0.9411
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Lus10032728 [exp]	11.8	0.9379
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Lus10013604 [exp]	13.8	0.9233
AT5G10930		CIPK5, SnRK3.24	SNF1-RELATED PROTEIN KINASE 3....		Lus10041653 [exp]	14.4	0.9208

Compare expression of checked genes

Lus10029187 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.