Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70230 462 / 2e-161 AXY4, TBL27 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1) AT1G01430 305 / 3e-99 TBL25 TRICHOME BIREFRINGENCE-LIKE 25 (.1) AT5G15890 298 / 1e-95 TBL21 TRICHOME BIREFRINGENCE-LIKE 21 (.1) AT4G01080 294 / 2e-95 TBL26 TRICHOME BIREFRINGENCE-LIKE 26 (.1) AT5G15900 281 / 3e-90 TBL19 TRICHOME BIREFRINGENCE-LIKE 19 (.1) AT4G11090 278 / 3e-89 TBL23 TRICHOME BIREFRINGENCE-LIKE 23 (.1) AT4G23790 277 / 7e-89 TBL24 TRICHOME BIREFRINGENCE-LIKE 24 (.1) AT3G28150 270 / 2e-86 AXY4L, TBL22 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1) AT4G25360 226 / 5e-68 TBL18 TRICHOME BIREFRINGENCE-LIKE 18 (.1.2) AT5G51640 220 / 5e-66 TBL17, YLS7 YELLOW-LEAF-SPECIFIC GENE 7, TRICHOME BIREFRINGENCE-LIKE 17, Plant protein of unknown function (DUF828) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010704 [exp] 887 / 0 AT1G70230 459 / 2e-160 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1) Lus10029454 [exp] 325 / 2e-107 AT1G01430 488 / 2e-171 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Lus10005952 [exp] 319 / 5e-106 AT1G01430 464 / 5e-163 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Lus10034087 [exp] 296 / 7e-96 AT5G15890 490 / 1e-172 TRICHOME BIREFRINGENCE-LIKE 21 (.1) Lus10003061 [exp] 293 / 7e-95 AT5G15900 488 / 5e-172 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Lus10032367 [exp] 291 / 2e-93 AT4G11090 521 / 0.0 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Lus10033950 [exp] 288 / 3e-92 AT4G11090 523 / 0.0 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Lus10024167 [exp] 263 / 2e-83 AT5G15900 381 / 3e-130 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Lus10039438 [exp] 253 / 1e-79 AT3G28150 431 / 8e-150 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G146100 [exp] 589 / 0 AT1G70230 494 / 2e-174 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1) Potri.010G095700 [exp] 563 / 0 AT1G70230 481 / 2e-169 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1) Potri.002G168400 [exp] 315 / 1e-103 AT1G01430 495 / 4e-174 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Potri.014G095800 [exp] 312 / 2e-102 AT1G01430 498 / 2e-175 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Potri.004G105700 [exp] 311 / 9e-102 AT5G15900 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.003G137800 [exp] 302 / 4e-98 AT4G11090 500 / 4e-176 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Potri.001G093800 [exp] 300 / 2e-97 AT4G11090 516 / 0.0 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Potri.017G073700 [exp] 289 / 1e-93 AT3G28150 442 / 3e-154 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1) Potri.004G105600 [exp] 285 / 5e-92 AT5G15900 411 / 5e-142 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.004G105500 [exp] 280 / 4e-90 AT5G15900 398 / 1e-136 TRICHOME BIREFRINGENCE-LIKE 19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10029188 pacid=23151784 polypeptide=Lus10029188 locus=Lus10029188.g ID=Lus10029188.BGIv1.0 annot-version=v1.0 ATGCCGGAAAAGCACAAGCTCGACGACCACAGAAAAACACCACTACCTGGTTACAGCTATGGAATTTCCACCACTACCAACAAAGACCATCATCATCATC ATCATCTATCTTCTTCCTTCACCAGAAAGCTCCTCCAATGGACCTTCTACTTAATCCTACCCTTCATCGTCTTCCGCCTCTATTTCTACCCTTACCCTCT TCACCAATCTCCCGATTCCCTCCCCCTCATCGGTAAAGATCCATCCTTTTCAGAAGCCGGAAGAATCGAAGAACATGAGGAAAGTCGTTCCCCTGCATGC AACTATACCGTAGGCAAATGGGTACCGGACGAGACAGGACCTTTGTACAACGGAACAACCTGCGCCACAATCAAATCCGGCCAGAATTGCATGAGCCATG GAAGGCCAGACATGGGGTTTCTGTACTGGAGATGGCAGCCTCAAAGTTGCAACCTTCCAAGGTTTGACCCCAACGACTTCTTACAATTATACTCCAATAG CCACATAGCTTTTGTCGGAGACTCGATGGCTAGAAACCAATTGGAATCCCTTCTCTGTATGCTGTCCTCTGTCTCAAATCATGAACTTGTCTATACTAAT GGAGAAGACAACAAGTTTAGAAGATGGCATTTTGGTGGTTCATACAATGTGACTGTTTCAATCTACTGGTCTCCTTTTTTAGTCAAAGGTGTGGAGAAGT CTAGGGATGGTCCTGATCATAATGAACTCTATTTGGATCAGATTGATGAGAGGTGGGGGAAAGATTTGGGGGAGATTGACTTGGTTATTCTTTCAATTGG TCACTGGTTCTTACATCCAGCGGTTTACTTCCAAGGAGTTGGTGAGAATTTGAATGTGCTAGGTTGTCATTACTGTCCTGGTATGAACCATACTGAGATC GGATTCTATGATGTCTTAAGGAAGGCGATTCGGACTACGTTGAACTCCATCTCCGAGAGACGTGGAGATGGAGGGATTGATGTGGTTATGACGACGTTTT CGCCTTCCCATTTCGAAGGGGAGTGGGACAAGTTTGGGGCTTGTTCGAGGATCGAGCCGTATGGGGAAGGGGATAAGGTGTTGGAAGGGATGGATGCTGA TATGAGGAAGATTGAAGTTGAGGAAGTTGAGTTAGCAAAGAGTGGTTTGAGTAATGGGAAGAAGGTGAGATTCGAGGTATTGGATGTGACGGAGTTGTCG TTGATGAGGCCGGATGGGCATCCGGGGGCTTACATGCACCCGTTCCCGTTTGCAAAGGGCGTCGGGGAGCGTGTTCAGAATGATTGTGTGCATTGGTGCT TGCCTGGTCCTGTGGATACTTGGAATGAGATCCTTCTTCAGGTTATGAAGAGGTTGAGGAACCAGTGA
AA sequence Show only first row Show all	>Lus10029188 pacid=23151784 polypeptide=Lus10029188 locus=Lus10029188.g ID=Lus10029188.BGIv1.0 annot-version=v1.0 MPEKHKLDDHRKTPLPGYSYGISTTTNKDHHHHHHLSSSFTRKLLQWTFYLILPFIVFRLYFYPYPLHQSPDSLPLIGKDPSFSEAGRIEEHEESRSPAC NYTVGKWVPDETGPLYNGTTCATIKSGQNCMSHGRPDMGFLYWRWQPQSCNLPRFDPNDFLQLYSNSHIAFVGDSMARNQLESLLCMLSSVSNHELVYTN GEDNKFRRWHFGGSYNVTVSIYWSPFLVKGVEKSRDGPDHNELYLDQIDERWGKDLGEIDLVILSIGHWFLHPAVYFQGVGENLNVLGCHYCPGMNHTEI GFYDVLRKAIRTTLNSISERRGDGGIDVVMTTFSPSHFEGEWDKFGACSRIEPYGEGDKVLEGMDADMRKIEVEEVELAKSGLSNGKKVRFEVLDVTELS LMRPDGHPGAYMHPFPFAKGVGERVQNDCVHWCLPGPVDTWNEILLQVMKRLRNQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70230		AXY4, TBL27	ALTERED XYLOGLUCAN 4, TRICHOME...		Lus10029188 [exp]	0	1
AT1G09960		ATSUC4, SUC4, A...	sucrose transporter 4 (.1)		Lus10032815 [exp]	1.4	0.8990
AT1G09960		ATSUC4, SUC4, A...	sucrose transporter 4 (.1)		Lus10007691 [exp]	2.0	0.8883
AT5G15890		TBL21	TRICHOME BIREFRINGENCE-LIKE 21...		Lus10034087 [exp]	3.2	0.8579
AT5G08530		CI51	51 kDa subunit of complex I (....		Lus10015807 [exp]	4.0	0.8639
AT1G03350			BSD domain-containing protein ...		Lus10042670 [exp]	4.9	0.8748
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Lus10038218 [exp]	9.2	0.8213
AT1G71780			unknown protein		Lus10016547 [exp]	13.0	0.8399
AT5G21090			Leucine-rich repeat (LRR) fami...		Lus10000196 [exp]	13.7	0.8284
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10007284 [exp]	15.1	0.8402
AT3G18410			Complex I subunit NDUFS6 (.1.2...		Lus10009027 [exp]	16.2	0.8387

Compare expression of checked genes

Lus10029188 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.