Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60010 152 / 2e-47 unknown protein AT1G10530 137 / 2e-41 unknown protein AT5G50090 123 / 5e-36 unknown protein AT5G62900 110 / 4e-31 unknown protein AT5G67620 98 / 5e-26 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010708 [exp] 283 / 1e-98 AT1G60010 177 / 3e-57 unknown protein Lus10030651 [exp] 201 / 1e-66 AT1G60010 171 / 4e-55 unknown protein Lus10030835 [exp] 155 / 7e-49 AT1G60010 150 / 2e-47 unknown protein Lus10004229 [exp] 118 / 6e-34 AT5G50090 150 / 1e-46 unknown protein Lus10042139 [exp] 115 / 2e-32 AT5G50090 141 / 4e-43 unknown protein Lus10043461 [exp] 114 / 6e-32 AT5G50090 146 / 7e-45 unknown protein Lus10034124 [exp] 112 / 1e-31 AT5G50090 147 / 3e-45 unknown protein Lus10019264 [exp] 90 / 1e-22 AT5G67620 163 / 5e-51 unknown protein Lus10026474 [exp] 38 / 0.0005 ND 47 / 1e-07
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G095400 [exp] 192 / 4e-63 AT1G60010 187 / 5e-61 unknown protein Potri.008G146500 [exp] 187 / 2e-60 AT1G60010 189 / 3e-61 unknown protein Potri.012G077300 [exp] 150 / 2e-46 AT5G50090 168 / 1e-53 unknown protein Potri.015G072501 [exp] 150 / 2e-46 AT5G50090 152 / 4e-47 unknown protein Potri.007G005600 [exp] 101 / 2e-27 AT5G67620 184 / 7e-60 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029193 pacid=23151820 polypeptide=Lus10029193 locus=Lus10029193.g ID=Lus10029193.BGIv1.0 annot-version=v1.0 ATGGGGAATTGCCAAGCAATCGATGCAGCAGCTCTAGTGATACAGCACCCATGCGGTAAAATCGAGAGGATGTACTGGCAAGTCACCGCCAGCGACATCA TGAGACTCAACCCCGGCCATTACGTCTCTCTCATCATCCCACTTGCTCCTCCTCCTGCTCCGGGAGACCTTCCCGCACCGGCTGCAGTTCAGTTCACTAG AGTTAAGCTTCTCCGGCCGACTGATACTCTGGCTCTTGGACATGCCTACCGCCTTGTAACAACTCAAGAGGTGGTGAAGGTTCTACGAGCGAAAAAGTCT GCCAAGATGAAGAAACAGCAGCAGGAGGAAGATGCGGAGTCAGTTGAGAAAGCAGAGTCGGATGAACAGAGTTCAGATTGCCAGGTGTCCAGGAAATCCG ACTCAGATAAGGACTTTCAGTTCCAGGCGACCAAACAAGAAAGACCTCGAAGAAGGGCAGCGCCAGTTAACTCTGCAGTAGTGAGATCCAAGCTATGGCG GCCAACATTACAGAGCATTTCCGAAGCTACCAGCTGA
AA sequence Show only first row Show all	>Lus10029193 pacid=23151820 polypeptide=Lus10029193 locus=Lus10029193.g ID=Lus10029193.BGIv1.0 annot-version=v1.0 MGNCQAIDAAALVIQHPCGKIERMYWQVTASDIMRLNPGHYVSLIIPLAPPPAPGDLPAPAAVQFTRVKLLRPTDTLALGHAYRLVTTQEVVKVLRAKKS AKMKKQQQEEDAESVEKAESDEQSSDCQVSRKSDSDKDFQFQATKQERPRRRAAPVNSAVVRSKLWRPTLQSISEATS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60010			unknown protein		Lus10029193 [exp]	0	1
AT4G09890			Protein of unknown function (D...		Lus10005802 [exp]	4.0	0.8074
AT4G17486			PPPDE putative thiol peptidase...		Lus10019437 [exp]	4.5	0.8014
AT5G41790		CIP1	COP1-interactive protein 1 (.1...		Lus10032362 [exp]	7.3	0.7518
AT5G10480		PEP, PAS2	PEPINO, PASTICCINO 2, Protein-...		Lus10025335 [exp]	12.5	0.7716
AT5G07980			dentin sialophosphoprotein-rel...		Lus10034692 [exp]	14.3	0.7971
AT2G26695			Ran BP2/NZF zinc finger-like s...		Lus10043289 [exp]	16.4	0.7754
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10012871 [exp]	18.0	0.7986
AT2G26730			Leucine-rich repeat protein ki...		Lus10001900 [exp]	19.6	0.7856
AT2G48150		ATGPX4	glutathione peroxidase 4 (.1)		Lus10042692 [exp]	20.1	0.7990
AT2G26695			Ran BP2/NZF zinc finger-like s...		Lus10019433 [exp]	20.4	0.7573

Compare expression of checked genes

Lus10029193 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.