Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70210 329 / 1e-112 ATCYCD1;1, CYCD1;1 CYCLIN D1;1 (.1) AT2G22490 160 / 2e-46 CYCD2;1, ATCYCD2;1 Cyclin D2;1 (.1.2) AT5G65420 150 / 4e-43 CYCD4;1 CYCLIN D4;1 (.1.2.3) AT5G10440 135 / 1e-37 CYCD4;2 cyclin d4;2 (.1) AT4G34160 135 / 7e-37 CYCD3;1 CYCLIN D3;1 (.1) AT3G50070 131 / 3e-35 CYCD3;3 CYCLIN D3;3 (.1) AT5G67260 128 / 3e-34 CYCD3;2 CYCLIN D3;2 (.1) AT4G37630 112 / 1e-28 CYCD5;1 cyclin d5;1 (.1.2) AT4G03270 105 / 5e-26 CYCD6;1 Cyclin D6;1 (.1) AT5G02110 78 / 3e-16 CYCD7;1 CYCLIN D7;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010709 [exp] 477 / 1e-170 AT1G70210 375 / 4e-130 CYCLIN D1;1 (.1) Lus10019825 [exp] 132 / 3e-35 AT4G34160 332 / 4e-112 CYCLIN D3;1 (.1) Lus10014089 [exp] 130 / 5e-35 AT4G34160 332 / 2e-112 CYCLIN D3;1 (.1) Lus10011507 [exp] 116 / 7e-30 AT5G67260 343 / 7e-117 CYCLIN D3;2 (.1) Lus10019317 [exp] 116 / 1e-29 AT5G67260 338 / 4e-115 CYCLIN D3;2 (.1) Lus10018739 [exp] 113 / 2e-28 AT4G34160 237 / 3e-75 CYCLIN D3;1 (.1) Lus10024796 [exp] 111 / 6e-28 AT4G34160 231 / 4e-73 CYCLIN D3;1 (.1) Lus10027874 [exp] 108 / 3e-26 AT4G34160 226 / 6e-70 CYCLIN D3;1 (.1) Lus10039738 [exp] 106 / 6e-26 AT4G03270 243 / 1e-78 Cyclin D6;1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G146600 [exp] 377 / 2e-131 AT1G70210 370 / 3e-128 CYCLIN D1;1 (.1) Potri.010G095200 [exp] 372 / 2e-129 AT1G70210 374 / 6e-130 CYCLIN D1;1 (.1) Potri.002G103500 [exp] 179 / 8e-54 AT2G22490 262 / 3e-85 Cyclin D2;1 (.1.2) Potri.009G086700 [exp] 172 / 4e-51 AT1G70210 168 / 3e-49 CYCLIN D1;1 (.1) Potri.005G157800 [exp] 171 / 7e-51 AT5G65420 228 / 2e-73 CYCLIN D4;1 (.1.2.3) Potri.001G292300 [exp] 166 / 1e-48 AT2G22490 178 / 1e-52 Cyclin D2;1 (.1.2) Potri.007G005700 [exp] 153 / 3e-44 AT1G70210 178 / 1e-53 CYCLIN D1;1 (.1) Potri.014G005900 [exp] 143 / 2e-40 AT1G70210 181 / 1e-54 CYCLIN D1;1 (.1) Potri.004G032100 [exp] 137 / 6e-38 AT4G03270 216 / 6e-69 Cyclin D6;1 (.1) Potri.019G118600 [exp] 131 / 1e-35 AT4G03270 244 / 2e-79 Cyclin D6;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF00134 [flax] [poplar] Cyclin_N Cyclin, N-terminal domain CL0065 [flax] [poplar] Cyclin PF02984 [flax] [poplar] Cyclin_C Cyclin, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10029194 pacid=23151782 polypeptide=Lus10029194 locus=Lus10029194.g ID=Lus10029194.BGIv1.0 annot-version=v1.0 ATGTCGGCGCTATCCTACGTCTCCGATTGCTTGTCGGACCTCCTCTGCGCGGAAGACTCATCCGAGATCTTCTCCGGCAATCCGCCGGCGGTGGATTACT CGTCGGACATCGAGTCGTCTTCTTGTACAGAAGAATCAATCGCCACTTTCATCGTCGACGAAGACCGGTTCGTGCCCGGGTTCGATTACTTGGCCCGGTT CCAGACCCGGTGCCTAGATGCTTCCGCTAGAGAAGAAGCTGTTGCATGGATCCTCAAGGTGCGGGCATACTATAACTTCTCCCCTCTAACGGCGTACCTC GCCGTCAACTACCTAGATCGCTTCCTCTACTCACGCCGTTTGCCGAAAACGGAGGGATGGCCGTTGCAGCTGCTATCGGCGGCGTGCTTGTCGTTGGCGG CGAAGATGGAGGAGCCGATGGTTCCGACGCTGGTGGATCTGCAAGTCTCGAGCGCAAAGTTCGTGTTCGAGCCGAGGACGGTCGGAAGGATGGAGCTTCT GGTTCTGTCCGTGCTGGATTGGCGGCTGAGGTCGGTGACGCCGTTCAGTTTCATCGGATTCTTTGCATGGAAGCTGGATTCCACGGGGACTTATCCCGGC CTGCTCATCTCGAGAGCTACGGATATTATTTTGTCCAACATCCAAGAAACCAGCTTTGTGGAGTATCGGCCGTCGAGCATTGCCGCCGCCGCGGTTCTTT GTGCGGCCGACGAGATTCCGAGTTTGTCTCTTGCTAATCCGGAACACGCTGAGTCTTGGTGTGATGGGTTAAGCAAAGAAAAAATATTGAGTTGTTATCG GCTAATGCAAGAGATGGAGGTGGACAACCAGCGGACGACGGCGGCGGTTTTGCAGCCAGCGAGGGGAGGCGGTTTTGCCGCCGGTGAGGGGAAGAAAGAG ATCCATTACTATAGCAACCACTACCACTACTACTACGACGTCTGA
AA sequence Show only first row Show all	>Lus10029194 pacid=23151782 polypeptide=Lus10029194 locus=Lus10029194.g ID=Lus10029194.BGIv1.0 annot-version=v1.0 MSALSYVSDCLSDLLCAEDSSEIFSGNPPAVDYSSDIESSSCTEESIATFIVDEDRFVPGFDYLARFQTRCLDASAREEAVAWILKVRAYYNFSPLTAYL AVNYLDRFLYSRRLPKTEGWPLQLLSAACLSLAAKMEEPMVPTLVDLQVSSAKFVFEPRTVGRMELLVLSVLDWRLRSVTPFSFIGFFAWKLDSTGTYPG LLISRATDIILSNIQETSFVEYRPSSIAAAAVLCAADEIPSLSLANPEHAESWCDGLSKEKILSCYRLMQEMEVDNQRTTAAVLQPARGGGFAAGEGKKE IHYYSNHYHYYYDV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70210		ATCYCD1;1, CYCD...	CYCLIN D1;1 (.1)		Lus10029194 [exp]	0	1
AT1G70210		ATCYCD1;1, CYCD...	CYCLIN D1;1 (.1)		Lus10010709 [exp]	1.0	0.9280
AT4G29720		ATPAO5	polyamine oxidase 5 (.1)		Lus10040559 [exp]	2.4	0.8821
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10019694 [exp]	5.3	0.8559
AT1G04520		PDLP2	plasmodesmata-located protein ...		Lus10014475 [exp]	5.3	0.8474
AT1G51560			Pyridoxamine 5'-phosphate oxid...		Lus10034828 [exp]	5.5	0.8518
AT1G74260		PUR4	purine biosynthesis 4 (.1)		Lus10012890 [exp]	7.1	0.8566
AT4G33520		AtHMAC6, HMA6, ...	Arabidopsis thaliana heavy met...		Lus10023777 [exp]	9.5	0.8252
AT4G13360			ATP-dependent caseinolytic (Cl...		Lus10043253 [exp]	12.0	0.8336
AT2G33860	ARF	ARF3, ETT	ETTIN, AUXIN RESPONSE TRANSCRI...		Lus10005264 [exp]	14.3	0.8535
AT1G66430			pfkB-like carbohydrate kinase ...		Lus10009126 [exp]	14.4	0.8409

Compare expression of checked genes

Lus10029194 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.