Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70200 187 / 4e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010710 [exp] 525 / 0 AT1G70200 204 / 2e-60 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G146700 [exp] 241 / 2e-75 AT1G70200 202 / 3e-59 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10029195 pacid=23151842 polypeptide=Lus10029195 locus=Lus10029195.g ID=Lus10029195.BGIv1.0 annot-version=v1.0 ATGGCGGCAACTCCATCTCCACTCTCCGCCGCGCCCAGCATCTCTCCGACGAATGCTCTTTCCTGTTCTCTTCTCTTCCACTCTCAAACTCTGTGGCACC TCACTCAATTCCAAACGCACTCGTCCTTATCCCTCTCGCAGCGATGCCGAAGAACAAATCTCAGAAGCAGCCATATCCTTCTGGAGAAGCTACGGAGTAC CTTTCCTTGCTACGCGTTCAAGAAGGGAAAGAGCGGAGGTCCCAATGTCATACGGAGCCGCGATTTCGAGGACGAAGATGTAGATTTTGATTTTCCGGAT GACGAGGATGGCGACGACTACGACTACGACGATGACGAGGAAGACGACGATGAGACGCTGTTGCCGTACGAGAAGATGCAGAAGCGGCTAGCGAAGAAGC CCCAAGGATTCGGCGTAGGGAAAGTCTACGACACTTCTATTGAAGACAAGCTGCTCGAAGAAATTCAGCAGAGTCAAGTTGCTCAAGCTGCCAATGTTAA TAACCTCAAGCACAATCCCATCAAGCCGAGTACCAAGGAAGACGATTCAAAGAAGAAAGCTTTTGAAGCTGTACCTAGTGGAATTAGGGTACATGTAAGC AACCTCCCAAAGAAAAGGAACGTCCAAAGGGATTTGAAATCAGCTTTCAAGGAGTTCCGTGGGATCGTTGATATAATTCGTGCTGTTTCTGGCAATAAGA AAACAAAAGATCCGATTTGCAAAGGGTTTGCCTTTGTTGATTTCAAGTCCGAGATTGATGCAGCAAGGTTTGTGAAACAGTTTTCTGGACAAAGCATAGC GTTTGGCAAGGTTGAGAAGCAGATAAAATGTAGAATGGCAAGTGCAAGCTCAAGCCGAGCATCTCGAGATGAATTGGCAGGGATCGATATGGATGATTCC TCTGCTGCTGAGGACGAGATCATAGAAATGCAACTGGTAGACGAAACTGAAAGCAAGAAATCTGTCAGCGTAGCAGGGCTAAATACAGTTGATAACAAGA AAGGTGTAAATGGAGCATCATCATCGTCGAAGAAGAAGAAACCGAAAATGTCGACTAAGAAGAGTAATGTTGGTACTAAAAACAAACCCAAGTTGGCAAT CCCAGGATCTGCTAAAAGGTTAAAGGTCAGGGAAAAAGCTGTGCTGACGGATGTCTTCAGTAAATACAGTTTAAAAGCTGCGGTTGCTTCTTCAAAGGAA GGAAGTTAG
AA sequence Show only first row Show all	>Lus10029195 pacid=23151842 polypeptide=Lus10029195 locus=Lus10029195.g ID=Lus10029195.BGIv1.0 annot-version=v1.0 MAATPSPLSAAPSISPTNALSCSLLFHSQTLWHLTQFQTHSSLSLSQRCRRTNLRSSHILLEKLRSTFPCYAFKKGKSGGPNVIRSRDFEDEDVDFDFPD DEDGDDYDYDDDEEDDDETLLPYEKMQKRLAKKPQGFGVGKVYDTSIEDKLLEEIQQSQVAQAANVNNLKHNPIKPSTKEDDSKKKAFEAVPSGIRVHVS NLPKKRNVQRDLKSAFKEFRGIVDIIRAVSGNKKTKDPICKGFAFVDFKSEIDAARFVKQFSGQSIAFGKVEKQIKCRMASASSSRASRDELAGIDMDDS SAAEDEIIEMQLVDETESKKSVSVAGLNTVDNKKGVNGASSSSKKKKPKMSTKKSNVGTKNKPKLAIPGSAKRLKVREKAVLTDVFSKYSLKAAVASSKE GS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70200			RNA-binding (RRM/RBD/RNP motif...		Lus10029195 [exp]	0	1
AT1G67280			Glyoxalase/Bleomycin resistanc...		Lus10038612 [exp]	1.0	0.9594
AT1G12570			Glucose-methanol-choline (GMC)...		Lus10024487 [exp]	2.4	0.9301
AT1G51080			unknown protein		Lus10034834 [exp]	3.7	0.9217
AT3G23070		ATCFM3A	CRM family member 3A (.1)		Lus10001187 [exp]	4.0	0.9349
AT4G31850		PGR3	proton gradient regulation 3 (...		Lus10003424 [exp]	6.5	0.9345
AT1G70200			RNA-binding (RRM/RBD/RNP motif...		Lus10010710 [exp]	6.6	0.9147
AT3G18390		EMB1865	embryo defective 1865, CRS1 / ...		Lus10009671 [exp]	9.2	0.9329
AT3G18390		EMB1865	embryo defective 1865, CRS1 / ...		Lus10009031 [exp]	10.2	0.9285
AT3G54820		PIP2D, PIP2;5	PLASMA MEMBRANE INTRINSIC PROT...		Lus10023515 [exp]	10.6	0.9277
AT3G55400		OVA1	OVULE ABORTION 1, methionyl-tR...		Lus10005156 [exp]	12.8	0.9209

Compare expression of checked genes

Lus10029195 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.