Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59990 634 / 0 RH22, EMB3108 RNA helicase 22, EMBRYO DEFECTIVE 3108, DEA(D/H)-box RNA helicase family protein (.1) AT4G09730 98 / 3e-21 RH39 RH39 (.1) AT2G40700 89 / 2e-18 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G08610 86 / 3e-17 PDE340 PIGMENT DEFECTIVE 340, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G77030 86 / 3e-17 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1) AT2G42520 85 / 4e-17 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G34910 85 / 4e-17 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G58570 84 / 8e-17 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G55150 83 / 1e-16 DEA(D/H)-box RNA helicase family protein (.1) AT1G31970 83 / 1e-16 STRS1 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010711 [exp] 955 / 0 AT1G59990 657 / 0.0 RNA helicase 22, EMBRYO DEFECTIVE 3108, DEA(D/H)-box RNA helicase family protein (.1) Lus10015978 [exp] 92 / 1e-19 AT3G58570 535 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015977 [exp] 92 / 1e-19 AT2G42520 738 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000848 [exp] 91 / 2e-19 AT2G42520 655 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015976 [exp] 91 / 9e-19 AT2G42520 849 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10030075 [exp] 89 / 2e-18 AT3G58570 603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10001074 [exp] 88 / 2e-18 AT3G58570 533 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037646 [exp] 89 / 3e-18 AT1G55150 843 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10000849 [exp] 88 / 5e-18 AT2G42520 837 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G193800 [exp] 697 / 0 AT1G59990 631 / 0.0 RNA helicase 22, EMBRYO DEFECTIVE 3108, DEA(D/H)-box RNA helicase family protein (.1) Potri.005G198300 [exp] 99 / 2e-21 AT4G09730 743 / 0.0 RH39 (.1) Potri.019G130900 [exp] 93 / 1e-19 AT1G55150 321 / 2e-103 DEA(D/H)-box RNA helicase family protein (.1) Potri.003G098800 [exp] 88 / 3e-18 AT1G31970 726 / 0.0 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) Potri.013G158000 [exp] 87 / 1e-17 AT1G55150 322 / 3e-104 DEA(D/H)-box RNA helicase family protein (.1) Potri.016G061900 [exp] 87 / 1e-17 AT2G42520 786 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G038300 [exp] 86 / 2e-17 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.010G004700 [exp] 84 / 7e-17 AT3G06980 635 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.015G083000 [exp] 84 / 8e-17 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G196000 [exp] 83 / 1e-16 AT3G58570 790 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10029196 pacid=23151791 polypeptide=Lus10029196 locus=Lus10029196.g ID=Lus10029196.BGIv1.0 annot-version=v1.0 ATGCTCTTCCTTCATCGCTCTGCTCCAGTGCTTCATCTTTACAAGCTATCATCATCAGCATCGTCGCCGAAGATTATCTTCTCTCAACTGTCACGAACTT ACTCATTCTTATCCATTCCCTTTCCACTATCCAATTGCAGAGAAGCTCGACGATTCTCTACAGCCGCCGCCGCCTCCGATCACACCCGTGGCGGTGATAC GTTCTTCGCCGACGAAAGTGTTTCCTGGAATGCTCTAGGCCTTTCCGACACAATCTCTAGAGCTCTCTCCGATGCCGGATTCCAAAGACCGTCTCTCGTC CAGGCCGAGTCCATACCGTCGATTCTCTCAGGGAAGGATTCGGTGATTGCTGCGGAGACCGGCAGCGGGAAAACTCATTCCTATCTAGTCCCTCTGATTC ATAAGCTATCTACTTCGAGTAATAATGATTCCGGTTCTCCCTCCCGTGGGGTTTCTCTTGTTCTTTGCCCCAACGTTTTGCTCTGTGAACAAGTGGTCCG AATGGCGAATGGCCTCTGTGATGAAAATGGCGATCCACTTCTCAAAGTTGCTGCTGTCTGTGGGAGGCAGGGATGGCCAGTTAGTCAACCGGACATCCTT GTGTCCACTCCAGCTGCACTTCTGAATAGCATTGAACCTAAGAAGCAAAGGAAGTTGAGCTTCATTCGTGGAGTCAAATATGTGGTGTTTGATGAAGCAG ATATGCTTCTCTGTGGAAGCTTCCAGAATCAAGTGATCCGTTTAATTAACATGTTCCGTTTCGATGAGAAAAATTTGTGTTGGACTAGCCAAACCCCAGC TGCTGCTTCTGCTGAAGTAGTAGAAGATTCCGAGTCTCTTCCGGAGGAAGCATTGGAGGATGAAGTAGAAGAAGCGCAAGGTGATTTGGCGATGGCTGAC GAGGAGGAAAACTTGGAGAGTGTTGCTGAGGTGGATGAGGTGGTTGAAGAGGCAGCAAATGAAGCTGGTTCGATCCAGAAAAGGGGATGGAGGAGAGTTA AAAGGGTTTACGATCGTAGTAAGCAGTATATCTTTGTGGCAGCTACTCTTCCGGTTAACGGAAAGAAGACAGCTGGTGCAGTGTTGAAATGGATGTTTCC CGAGGCCAACTGGATTAGTGGAAGCTACCTCCACTGCCACAATCCCAGATTGGAGAGGAGGTGGATTGAGGTTACAGTGGATAGCCAGGTGGATGCACTC ATAGAGGCCTTGAAGCAAGGACATGAATCTGAAATGGCTAGTAGTAATGTTAGTCGAACTATGGTGTTTGCAAATACCGTTGAGGCTGTCGAAGCAGTAG CTGATATACTGAAAAGAGCTGGGATTGAGTGTTACCGGTACCATAAGGAGGGATCTTTGGAAGAACGTGCAAGTACATTGGATGATTTCAGAGAGAAAGG TGGAATCTTTGTCTGCACTGATGCTGCTGCTCGTGGAGTTGATATTCCGAATATCACACATGTTGTTCAGGCAGACTTTGCAACATCTGCTGTAGATTTC TTGCATAGGGTTGGCCGCACAGGTCGAGCTGGTCAGTACGGTCTGGTTACTAGCCTGTACACCGATTTCAATCGAGATCTCGTCTCTGCAATTCGTGAAG CTGAGAGATTGGGGAACCCAGTGGAGACTGCGTTTAGCAGGAAAAGAAGCTTCAGAAACAAACTGAAGAAGAGAGGTAAACCTTTCAATATGTGTTACCG AGAAGTTTGA
AA sequence Show only first row Show all	>Lus10029196 pacid=23151791 polypeptide=Lus10029196 locus=Lus10029196.g ID=Lus10029196.BGIv1.0 annot-version=v1.0 MLFLHRSAPVLHLYKLSSSASSPKIIFSQLSRTYSFLSIPFPLSNCREARRFSTAAAASDHTRGGDTFFADESVSWNALGLSDTISRALSDAGFQRPSLV QAESIPSILSGKDSVIAAETGSGKTHSYLVPLIHKLSTSSNNDSGSPSRGVSLVLCPNVLLCEQVVRMANGLCDENGDPLLKVAAVCGRQGWPVSQPDIL VSTPAALLNSIEPKKQRKLSFIRGVKYVVFDEADMLLCGSFQNQVIRLINMFRFDEKNLCWTSQTPAAASAEVVEDSESLPEEALEDEVEEAQGDLAMAD EEENLESVAEVDEVVEEAANEAGSIQKRGWRRVKRVYDRSKQYIFVAATLPVNGKKTAGAVLKWMFPEANWISGSYLHCHNPRLERRWIEVTVDSQVDAL IEALKQGHESEMASSNVSRTMVFANTVEAVEAVADILKRAGIECYRYHKEGSLEERASTLDDFREKGGIFVCTDAAARGVDIPNITHVVQADFATSAVDF LHRVGRTGRAGQYGLVTSLYTDFNRDLVSAIREAERLGNPVETAFSRKRSFRNKLKKRGKPFNMCYREV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G59990		RH22, EMB3108	RNA helicase 22, EMBRYO DEFECT...		Lus10029196 [exp]	0	1
AT1G59990		RH22, EMB3108	RNA helicase 22, EMBRYO DEFECT...		Lus10010711 [exp]	1.4	0.9251
AT1G14810			semialdehyde dehydrogenase fam...		Lus10030759 [exp]	3.5	0.8868
AT5G11880			Pyridoxal-dependent decarboxyl...		Lus10023548 [exp]	5.5	0.8947
AT4G33680		AGD2	ABERRANT GROWTH AND DEATH 2, P...		Lus10035646 [exp]	5.9	0.9278
AT1G05670			Pentatricopeptide repeat (PPR-...		Lus10026465 [exp]	6.0	0.8741
AT5G01590			unknown protein		Lus10022672 [exp]	8.8	0.8874
AT5G11880			Pyridoxal-dependent decarboxyl...		Lus10040433 [exp]	11.0	0.9176
AT2G45440		DHDPS2	dihydrodipicolinate synthase (...		Lus10009302 [exp]	15.7	0.8944
AT5G38360			alpha/beta-Hydrolases superfam...		Lus10028478 [exp]	15.9	0.8386
AT4G15820			unknown protein		Lus10043415 [exp]	15.9	0.8718

Compare expression of checked genes

Lus10029196 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.