Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64950 227 / 6e-71 Mitochondrial transcription termination factor family protein (.1) AT1G21150 138 / 5e-37 Mitochondrial transcription termination factor family protein (.1) AT5G07900 137 / 1e-36 Mitochondrial transcription termination factor family protein (.1) AT1G61970 94 / 4e-21 Mitochondrial transcription termination factor family protein (.1.2) AT1G62010 92 / 2e-20 Mitochondrial transcription termination factor family protein (.1) AT1G61980 92 / 3e-20 Mitochondrial transcription termination factor family protein (.1) AT1G79220 65 / 2e-11 Mitochondrial transcription termination factor family protein (.1) AT1G62085 65 / 2e-11 Mitochondrial transcription termination factor family protein (.1) AT1G56380 65 / 3e-11 Mitochondrial transcription termination factor family protein (.1.2) AT4G14605 63 / 1e-10 Mitochondrial transcription termination factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028912 [exp] 493 / 2e-175 AT5G64950 249 / 1e-79 Mitochondrial transcription termination factor family protein (.1) Lus10004329 [exp] 482 / 7e-171 AT5G64950 238 / 2e-75 Mitochondrial transcription termination factor family protein (.1) Lus10010714 [exp] 213 / 4e-67 AT4G38840 117 / 3e-33 SAUR-like auxin-responsive protein family (.1) Lus10008688 [exp] 143 / 4e-39 AT5G07900 197 / 2e-59 Mitochondrial transcription termination factor family protein (.1) Lus10040820 [exp] 132 / 9e-35 AT5G07900 221 / 2e-68 Mitochondrial transcription termination factor family protein (.1) Lus10040817 [exp] 119 / 6e-30 AT5G07900 225 / 6e-70 Mitochondrial transcription termination factor family protein (.1) Lus10036450 [exp] 117 / 3e-29 AT5G07900 176 / 3e-51 Mitochondrial transcription termination factor family protein (.1) Lus10016550 [exp] 113 / 4e-28 AT5G07900 219 / 9e-68 Mitochondrial transcription termination factor family protein (.1) Lus10041122 [exp] 109 / 1e-26 AT5G07900 166 / 2e-47 Mitochondrial transcription termination factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G034700 [exp] 147 / 1e-40 AT5G07900 202 / 2e-61 Mitochondrial transcription termination factor family protein (.1) Potri.014G133200 [exp] 145 / 8e-40 AT5G07900 436 / 3e-152 Mitochondrial transcription termination factor family protein (.1) Potri.003G190400 [exp] 140 / 6e-38 AT5G07900 206 / 9e-63 Mitochondrial transcription termination factor family protein (.1) Potri.003G190300 [exp] 137 / 7e-37 AT5G07900 209 / 8e-64 Mitochondrial transcription termination factor family protein (.1) Potri.004G222000 [exp] 134 / 6e-36 AT5G07900 200 / 1e-60 Mitochondrial transcription termination factor family protein (.1) Potri.001G029400 [exp] 134 / 1e-35 AT5G07900 181 / 4e-53 Mitochondrial transcription termination factor family protein (.1) Potri.003G190700 [exp] 131 / 8e-35 AT5G07900 213 / 3e-65 Mitochondrial transcription termination factor family protein (.1) Potri.001G034933 [exp] 129 / 9e-34 AT5G07900 194 / 3e-58 Mitochondrial transcription termination factor family protein (.1) Potri.015G038500 [exp] 128 / 2e-33 AT5G07900 218 / 2e-67 Mitochondrial transcription termination factor family protein (.1) Potri.001G030300 [exp] 128 / 2e-33 AT5G07900 190 / 2e-56 Mitochondrial transcription termination factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [flax] [poplar] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Lus10029199 pacid=23151702 polypeptide=Lus10029199 locus=Lus10029199.g ID=Lus10029199.BGIv1.0 annot-version=v1.0 ATGCTATCTCTCAAGCTACTCTCAGCTTACCGTCTCGGCAATCTACGTTCATTTCCAGGAGGAGGAGGAGGAGCTTGCTTCATTGCCTGCTTCTCTAATC TCGCCGGAACCCCAACCACAAGAAGAACATCTCCCTTAATAGATTGCTTGATTTCCACCTTCAAATTCACCGAAACCCAAGCCGTAGCAATCGCCGCTCG CTTCTCCCCACTCAGATCTCCTCAAAAGCCCAAAGCTTTATCCCGATTCTTCCGCGACCTAGGTCTAACGGACGACCACATCCAATCAACAGTCTCCGGA GCACCTCAGATTCTGTTCGCGAACCTCGACCAGACCCTCAAACCCAAGATCCAGCAAATCCAGAAACTAGGGTTCGAAGGTTCTCGTCTCGGTAAGTTCC TCTCCAAAAACCCTGGGGTTTTAACTGCTAGCTTGAATCAGAAGCTGGTTCGTCGGATTGACACTCTGCAGAAAACCGTATCTCATAAGGATTTGTCTAG AGGCGTAGAGAAATCCGGCTGGGTGCTCTATAGGTACCCGGAATCGAGATTATTGTCGAACATTGCGTTTCTGAAGAGTTATGGCATTGTGGATTCTCAG CTCTCGATACTGTTCAGGGTGCAGCCGAGGATTTTCTTGGCGACGGAATCTCAACTTAGGGATGTTGTTTCGAGGACTTTGGGGTTTGGGTTTTCGGTTG GATCCAATATGTTTGTGTATGGTTTGCATACTGTCAATGGATTTAACGACATTGCAATGGAGAAGAAATTCGCAGTCTTTATTGAGTTCGGGTTTTCGAG GGAGGAATGTAACGACATGCTCAGAAAGGCTCCTGTGTTGATGAGGCATGGTGAGGAGAAGTTGAAGTTCGGGATTGATTTCTATTTGAACACAATGAAG CTGACGAGGGAGATGATTTGTCGTAGTCCTGCGCTGTTTATGTATATCATGAGTGAAAGAGTGATTCCGAGGTATCGTGTGTTGGAAGTTTTGGTGTCGA AAGCACTGTTAAAGAGTAGGCCGAATTTTGGTACTGTTGCGAGCTTGACAGATGAGAGGTTTATCGAGAAGTTTGTGTTTCGGTCTGTAGATGATGCCGA GGAACTGTTGATGGTTTACAAAGGTGCAACATGTCTATAG
AA sequence Show only first row Show all	>Lus10029199 pacid=23151702 polypeptide=Lus10029199 locus=Lus10029199.g ID=Lus10029199.BGIv1.0 annot-version=v1.0 MLSLKLLSAYRLGNLRSFPGGGGGACFIACFSNLAGTPTTRRTSPLIDCLISTFKFTETQAVAIAARFSPLRSPQKPKALSRFFRDLGLTDDHIQSTVSG APQILFANLDQTLKPKIQQIQKLGFEGSRLGKFLSKNPGVLTASLNQKLVRRIDTLQKTVSHKDLSRGVEKSGWVLYRYPESRLLSNIAFLKSYGIVDSQ LSILFRVQPRIFLATESQLRDVVSRTLGFGFSVGSNMFVYGLHTVNGFNDIAMEKKFAVFIEFGFSREECNDMLRKAPVLMRHGEEKLKFGIDFYLNTMK LTREMICRSPALFMYIMSERVIPRYRVLEVLVSKALLKSRPNFGTVASLTDERFIEKFVFRSVDDAEELLMVYKGATCL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64950			Mitochondrial transcription te...		Lus10029199 [exp]	0	1
AT3G02530			TCP-1/cpn60 chaperonin family ...		Lus10017585 [exp]	3.3	0.9236
AT5G26360			TCP-1/cpn60 chaperonin family ...		Lus10017853 [exp]	4.9	0.9186
AT1G26460			Tetratricopeptide repeat (TPR)...		Lus10004649 [exp]	9.8	0.9005
AT1G54610			Protein kinase superfamily pro...		Lus10033975 [exp]	9.8	0.8960
AT2G05920			Subtilase family protein (.1)		Lus10033431 [exp]	17.3	0.8723
AT5G19320		RANGAP2	RAN GTPase activating protein ...		Lus10034066 [exp]	17.5	0.8824
AT2G04865			Aminotransferase-like, plant m...		Lus10001163 [exp]	18.3	0.8589
AT4G20980			Eukaryotic translation initiat...		Lus10015435 [exp]	18.7	0.8721
AT3G13920		RH4, TIF4A1, EI...	eukaryotic translation initiat...		Lus10021583 [exp]	21.0	0.8645
AT3G03960			TCP-1/cpn60 chaperonin family ...		Lus10007430 [exp]	23.1	0.8757

Compare expression of checked genes

Lus10029199 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.