Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51760 468 / 2e-163 JR3, IAR3 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) AT5G56660 467 / 5e-163 ILL2 IAA-leucine resistant (ILR)-like 2 (.1) AT5G56650 463 / 1e-161 ILL1 IAA-leucine resistant (ILR)-like 1 (.1) AT1G51780 445 / 1e-154 ILL5 IAA-leucine resistant (ILR)-like gene 5 (.1) AT1G44350 445 / 3e-154 ILL6 IAA-leucine resistant (ILR)-like gene 6 (.1) AT3G02875 418 / 6e-144 ILR1 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) AT5G54140 390 / 4e-133 ILL3 IAA-leucine-resistant (ILR1)-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010715 [exp] 839 / 0 AT1G51760 463 / 1e-161 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10030659 [exp] 717 / 0 AT1G51760 489 / 8e-172 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10030828 [exp] 713 / 0 AT1G51760 489 / 6e-172 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10037601 [exp] 484 / 6e-170 AT1G51760 649 / 0.0 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10032963 [exp] 455 / 3e-158 AT5G54140 545 / 0.0 IAA-leucine-resistant (ILR1)-like 3 (.1) Lus10025668 [exp] 455 / 4e-158 AT1G44350 585 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1) Lus10006864 [exp] 429 / 1e-148 AT1G51760 586 / 0.0 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10016998 [exp] 427 / 6e-147 AT3G02875 571 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Lus10021321 [exp] 420 / 2e-144 AT3G02875 573 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G035900 [exp] 642 / 0 AT1G51760 482 / 1e-168 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Potri.002G082400 [exp] 499 / 2e-175 AT1G44350 609 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1) Potri.005G178900 [exp] 493 / 1e-172 AT1G44350 604 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1) Potri.003G045200 [exp] 486 / 7e-171 AT1G51760 680 / 0.0 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Potri.016G074100 [exp] 461 / 3e-160 AT3G02875 508 / 1e-178 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Potri.006G207400 [exp] 448 / 1e-155 AT3G02875 584 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Potri.015G004000 [exp] 444 / 3e-154 AT5G54140 520 / 0.0 IAA-leucine-resistant (ILR1)-like 3 (.1) Potri.012G007400 [exp] 442 / 2e-153 AT5G54140 548 / 0.0 IAA-leucine-resistant (ILR1)-like 3 (.1) Potri.006G207300 [exp] 436 / 4e-151 AT3G02875 568 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Potri.003G091100 [exp] 43 / 0.0003 AT4G17830 734 / 0.0 Peptidase M20/M25/M40 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07687 [flax] [poplar] M20_dimer Peptidase dimerisation domain CL0035 [flax] [poplar] Peptidase_MH PF01546 [flax] [poplar] Peptidase_M20 Peptidase family M20/M25/M40
Representative CDS sequence Show only first row Show all	>Lus10029200 pacid=23151647 polypeptide=Lus10029200 locus=Lus10029200.g ID=Lus10029200.BGIv1.0 annot-version=v1.0 ATGGCGGCGGCCGGAGCTACGGCGGCAGTAGTACTATATCTGCATGTTCTCTCCCTCTTCTTCACCGCCGTCCTCTGCTGCCAACCCGCGGTTCATTCGA GCTACCCGGTTATGAAAGCGGGGAACTTTTCGGTTCGGGATGAGATAGTCGAGCTGGCCAGTGAGGGATCGACGGTGGATATGATGAGGAGGATAAGGCG GCGGATTCACGAGAATCCAGAGCTTGCTTACGAGGAGTACGAGACGAGTGAGCTGATAAGGGAGGAGCTTGACCGGCTGGGAATACCGTACCGGTGGCCG GTGACGAAGACGGGAATTGTGGCGACGGTTGGGGATGGTTCACCGCCGTTTGTGGCGCTCCGGGCTGATATGGATGCTCTGCCTATTCAGGAAATGGTGG AATGGGAGCACAAGAGCAAAGTAGATGGGAAAATGCATGCCTGTGGGCATGATGCTCACGTTGCAATGCTTCTTGGTGCTGCAAAGATTCTGCAACAGAT GAGACACACATTGCAGGGAACTGTGGTCCTGATATTTCAACCCGCGGAGGAGAAAGGGCTCGGAGCGAAAGACATGATAGCAGAAGGCGCATTGGAAAAT GTGGAAGTGATTTTCGGAATCCACATAGCTCATGTTTTTCCATCAGGCTCTGTTGCATCCAGGCCGGGACAATTCCTTGCTGGATGCGGAAGCTTCAAGG CGAAGATCACCGGGAAAGGTGGCCATGCAGCCATTCCTCAGAACTCCATCGATCCGATCGTTGCAGCTTCTTCATTGGTCATCAGCTTGCAGAACATTGT ATCAAGAGAAACTGACCCTCTAGATTCTCAGGTGGTTTCTGTTGCGATGATCAATGGGGGGACCGCGTTCAATGTGATTCCGGATTCAGCCATGATAGCT GGATCATACAGGGCTTTCAGCAGGGAAACCTTCAAGTCCCTCAGAGAAAGAATCAAAGAGGTGATTGGAGCACAAGCAGCAGTGCACAGATGCACATCAG AGGTAGATTTCGACGGGGAGGAACACTCGAACATCCCACCAACGATCAACGACGACAGAATCTACGAGTTTGCTAGGCGAGTCTCAGCAGACCTAGTAGG GGAGTCCAACACAAAGCTATCTCCAAGCTTTATGGGAAGTGAAGATTTTGCATTCTACTTGGACAAAGTGCCTGGTGTTTTCATGTTTCTAGGAGTTAGG AATGAGGAATTGGGAGCCATATACCCACCTCACAGCCCTTATTTTATCATAGATGAAGATGCTTTCACTGTAGGTGCAGCTCTACATGCAGCCTTTGCAC ATTCCTATCTTTCAAATTCAAAACCACCAGAACTTTGA
AA sequence Show only first row Show all	>Lus10029200 pacid=23151647 polypeptide=Lus10029200 locus=Lus10029200.g ID=Lus10029200.BGIv1.0 annot-version=v1.0 MAAAGATAAVVLYLHVLSLFFTAVLCCQPAVHSSYPVMKAGNFSVRDEIVELASEGSTVDMMRRIRRRIHENPELAYEEYETSELIREELDRLGIPYRWP VTKTGIVATVGDGSPPFVALRADMDALPIQEMVEWEHKSKVDGKMHACGHDAHVAMLLGAAKILQQMRHTLQGTVVLIFQPAEEKGLGAKDMIAEGALEN VEVIFGIHIAHVFPSGSVASRPGQFLAGCGSFKAKITGKGGHAAIPQNSIDPIVAASSLVISLQNIVSRETDPLDSQVVSVAMINGGTAFNVIPDSAMIA GSYRAFSRETFKSLRERIKEVIGAQAAVHRCTSEVDFDGEEHSNIPPTINDDRIYEFARRVSADLVGESNTKLSPSFMGSEDFAFYLDKVPGVFMFLGVR NEELGAIYPPHSPYFIIDEDAFTVGAALHAAFAHSYLSNSKPPEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56660		ILL2	IAA-leucine resistant (ILR)-li...		Lus10029200 [exp]	0	1
AT4G17900			PLATZ transcription factor fam...		Lus10020337 [exp]	14.9	0.6721
AT4G24880			unknown protein		Lus10029244 [exp]	20.1	0.6151
AT4G37420			Domain of unknown function (DU...		Lus10016022 [exp]	21.5	0.6653
AT5G14540			Protein of unknown function (D...		Lus10018089 [exp]	25.2	0.6435
AT2G31200		ADF6, ATADF6	actin depolymerizing factor 6 ...		Lus10024885 [exp]	25.2	0.6511
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Lus10041300 [exp]	29.3	0.6175
AT3G26600		ARO4	armadillo repeat only 4 (.1)		Lus10026695 [exp]	40.0	0.6364
AT5G64260		EXL2, MSJ1.10	EXORDIUM like 2 (.1)		Lus10039143 [exp]	41.6	0.6382
AT3G20300			Protein of unknown function (D...		Lus10033919 [exp]	62.0	0.6096
AT5G56240			unknown protein		Lus10000240 [exp]	78.5	0.5885

Compare expression of checked genes

Lus10029200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.