Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24110 288 / 6e-98 Peroxidase superfamily protein (.1) AT5G47000 278 / 7e-94 Peroxidase superfamily protein (.1) AT3G28200 271 / 2e-91 Peroxidase superfamily protein (.1) AT5G40150 267 / 1e-89 Peroxidase superfamily protein (.1) AT4G17690 264 / 2e-88 Peroxidase superfamily protein (.1) AT2G18980 202 / 2e-64 Peroxidase superfamily protein (.1) AT5G14130 201 / 1e-63 Peroxidase superfamily protein (.1) AT4G37530 199 / 8e-63 Peroxidase superfamily protein (.1.2) AT4G30170 194 / 3e-61 Peroxidase family protein (.1) AT4G37520 194 / 4e-61 Peroxidase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010716 [exp] 470 / 2e-169 AT1G24110 407 / 4e-143 Peroxidase superfamily protein (.1) Lus10004234 [exp] 305 / 3e-104 AT1G24110 391 / 1e-136 Peroxidase superfamily protein (.1) Lus10042144 [exp] 304 / 5e-104 AT1G24110 390 / 2e-136 Peroxidase superfamily protein (.1) Lus10039445 [exp] 284 / 4e-96 AT5G40150 467 / 8e-167 Peroxidase superfamily protein (.1) Lus10039471 [exp] 240 / 7e-81 AT5G40150 290 / 2e-99 Peroxidase superfamily protein (.1) Lus10014517 [exp] 237 / 1e-79 AT5G40150 280 / 2e-95 Peroxidase superfamily protein (.1) Lus10032170 [exp] 236 / 2e-79 AT5G40150 280 / 2e-95 Peroxidase superfamily protein (.1) Lus10011079 [exp] 204 / 2e-64 AT4G37530 479 / 2e-171 Peroxidase superfamily protein (.1.2) Lus10012540 [exp] 199 / 1e-62 AT5G14130 384 / 5e-134 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G036100 [exp] 362 / 6e-127 AT1G24110 400 / 2e-140 Peroxidase superfamily protein (.1) Potri.012G076500 [exp] 315 / 1e-108 AT4G17690 423 / 1e-149 Peroxidase superfamily protein (.1) Potri.001G351000 [exp] 279 / 2e-94 AT3G28200 448 / 2e-159 Peroxidase superfamily protein (.1) Potri.007G074700 [exp] 233 / 4e-76 AT5G47000 358 / 8e-124 Peroxidase superfamily protein (.1) Potri.004G052100 [exp] 213 / 6e-68 AT2G34060 458 / 1e-162 Peroxidase superfamily protein (.1) Potri.007G053400 [exp] 210 / 3e-67 AT5G67400 471 / 4e-168 root hair specific 19 (.1) Potri.001G329200 [exp] 210 / 3e-67 AT4G37530 392 / 4e-137 Peroxidase superfamily protein (.1.2) Potri.017G064100 [exp] 208 / 2e-66 AT5G67400 372 / 2e-129 root hair specific 19 (.1) Potri.018G089900 [exp] 202 / 3e-64 AT4G30170 472 / 6e-169 Peroxidase family protein (.1) Potri.011G062300 [exp] 192 / 8e-60 AT2G34060 434 / 1e-152 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10029201 pacid=23151818 polypeptide=Lus10029201 locus=Lus10029201.g ID=Lus10029201.BGIv1.0 annot-version=v1.0 ATGGTGGTCCGTTCCAAGACCGAGTTGGAGCTCGAATGCCCGAATGTGATCTCGTGTGCGGACATTCTATCCGTGGCAACTCGCAACCTTGTCACAATGG TTGGTGGACCGTTCTATCCGGTCCGCCTTGGCCGGAAGGACGGCATGGTTTCAGACCCTTCCCGGGTGGAGCCCAACATACTCCGCCCCACAATGTCAAT CTCTCAGATCATCGGATTCTTTGTTTCGAGAGGGTTCACGGTTCAAGAAATGGTAACATTGATGGGAGCGCATACGATCGGGTTCTCACATTGTAGAGAG TTTGCTAATCGGCTTTACAATTTCAGCAAGGAAACCCCTACAGATCCTTCACTCAACCCGAAATTTGCAGACGGGCTGAAGAAACTGTGCGAAAACTATA CGAAGGACCCAACAATGAGCGCATTCAACGACGTGATGACCCCTGGGAAATTTGACAACATGTATTACCAAAATCTGGAGAAAGGTTTGGGATTGCTTTC GTCGGATGAAGCTATGTACATGGATCAGAGAACGAAGCCTTTCGTCAACCTTTATGCAAAGAATGAGTCGGCCTTCTTCCAAGCGTTTGCTCAAGCGATG GAGAAGGTCAGTAACTACAAGGTCAAGACAGGGAAAGATGGAGAGATCAGACATAGGTGCGACCAGATCAACACTGTAAAAATTTAA
AA sequence Show only first row Show all	>Lus10029201 pacid=23151818 polypeptide=Lus10029201 locus=Lus10029201.g ID=Lus10029201.BGIv1.0 annot-version=v1.0 MVVRSKTELELECPNVISCADILSVATRNLVTMVGGPFYPVRLGRKDGMVSDPSRVEPNILRPTMSISQIIGFFVSRGFTVQEMVTLMGAHTIGFSHCRE FANRLYNFSKETPTDPSLNPKFADGLKKLCENYTKDPTMSAFNDVMTPGKFDNMYYQNLEKGLGLLSSDEAMYMDQRTKPFVNLYAKNESAFFQAFAQAM EKVSNYKVKTGKDGEIRHRCDQINTVKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24110			Peroxidase superfamily protein...		Lus10029201 [exp]	0	1
AT5G17680			disease resistance protein (TI...		Lus10041060 [exp]	3.3	0.8450
AT3G21070		NADK1, ATNADK-1	NAD kinase 1 (.1.2)		Lus10003178 [exp]	4.9	0.8057
AT5G63800		MUM2, BGAL6	MUCILAGE-MODIFIED 2, beta-gala...		Lus10033500 [exp]	7.5	0.8011
AT1G24110			Peroxidase superfamily protein...		Lus10010716 [exp]	12.0	0.7719
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10029900 [exp]	12.4	0.8018
AT5G41650			Lactoylglutathione lyase / gly...		Lus10024719 [exp]	14.3	0.7068
AT5G16920			Fasciclin-like arabinogalactan...		Lus10039146 [exp]	14.3	0.7486
AT5G10190			Major facilitator superfamily ...		Lus10027265 [exp]	16.0	0.7553
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10031748 [exp]	17.7	0.7719
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Lus10023419 [exp]	17.9	0.7792

Compare expression of checked genes

Lus10029201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.