Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24120 577 / 0 ARL1 ARG1-like 1 (.1) AT1G59980 479 / 8e-169 GPS4, ARL2 ,ATDJC39 gravity persistence signal 4, ARG1-like 2 (.1) AT1G68370 474 / 4e-167 ARG1 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) AT3G17830 77 / 5e-15 Molecular chaperone Hsp40/DnaJ family protein (.1) AT4G39960 76 / 9e-15 Molecular chaperone Hsp40/DnaJ family protein (.1) AT5G03160 75 / 3e-14 ATP58IPK homolog of mamallian P58IPK (.1) AT2G22360 74 / 3e-14 DNAJ heat shock family protein (.1) AT3G08910 73 / 4e-14 DNAJ heat shock family protein (.1) AT5G48030 74 / 5e-14 GFA2 gametophytic factor 2 (.1) AT5G06910 72 / 5e-14 ATJ6, EMB1393 J-domain protein 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010717 [exp] 761 / 0 AT1G24120 590 / 0.0 ARG1-like 1 (.1) Lus10030660 [exp] 622 / 0 AT1G24120 588 / 0.0 ARG1-like 1 (.1) Lus10030827 [exp] 589 / 0 AT1G24120 545 / 0.0 ARG1-like 1 (.1) Lus10005113 [exp] 481 / 1e-169 AT1G68370 688 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Lus10034344 [exp] 430 / 3e-149 AT1G68370 624 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Lus10031336 [exp] 76 / 2e-14 AT3G17830 459 / 5e-158 Molecular chaperone Hsp40/DnaJ family protein (.1) Lus10019928 [exp] 75 / 2e-14 AT5G03160 637 / 0.0 homolog of mamallian P58IPK (.1) Lus10000631 [exp] 75 / 3e-14 AT2G22360 672 / 0.0 DNAJ heat shock family protein (.1) Lus10023148 [exp] 74 / 3e-14 AT2G22360 675 / 0.0 DNAJ heat shock family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G036200 [exp] 629 / 0 AT1G24120 566 / 0.0 ARG1-like 1 (.1) Potri.008G193500 [exp] 620 / 0 AT1G24120 568 / 0.0 ARG1-like 1 (.1) Potri.008G123200 [exp] 471 / 7e-166 AT1G68370 670 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Potri.010G122300 [exp] 464 / 1e-162 AT1G68370 671 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Potri.005G073900 [exp] 78 / 2e-15 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.009G065500 [exp] 77 / 4e-15 AT5G48030 504 / 1e-177 gametophytic factor 2 (.1) Potri.001G271300 [exp] 76 / 1e-14 AT5G48030 530 / 0.0 gametophytic factor 2 (.1) Potri.002G198000 [exp] 74 / 2e-14 AT3G62600 551 / 0.0 DNAJ heat shock family protein (.1) Potri.007G094900 [exp] 74 / 3e-14 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1) Potri.014G122600 [exp] 74 / 3e-14 AT3G62600 565 / 0.0 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10029202 pacid=23151695 polypeptide=Lus10029202 locus=Lus10029202.g ID=Lus10029202.BGIv1.0 annot-version=v1.0 ATGCCGGCAAACAGATCAAAGTCGGAGAAGGAGGATGCCGCCGGGAAGAATCTCCGGCGGGATCCTTATGAGGTCCTCGGCGTGTCCAGGAACTCTTCCG ACCAGGAAATCAAGAGCGCTTACCGTAAAATGGCCCTCAAGTACCATCCAGACAAGAATGCAAATGATCCAGAAGCAGCTGATATGTTCAAAGAAGCTAC ATTTTCCTACGACATATTGTCTGATCCTGAGAAAAGACGCCAGTTTGATCATGCTGGATTTGCAGCTGTTGAGGCAGAAAATCAAGATTTGGAGCTGGAT CTATCAAGCTTAGGAACTATGAACACTATGTTTGCAGCACTTTTTAGCAAACTTGGTGTGCCCATTAAGACAACTGTATCAGCTAATATTTTGGAGGAAG CACTTAATGGTGCAGTTTCCGTGAGCCCACTTGAACTGGGGCATCCGATATCTCGGAAGGTTGAGAAGCAATCTGCTCACTTCTATTCTGTCAAAATCTC AGAGGAAGAAGCAAAAGCTGGTTTTGTTTGCCGAGTCCATTCAACTGACAAAAGCAAGTTCAAGTTATTGTACTTTGATCAAGAAGACAATCGTGGATTA AGCCTTGCTTTACAGGAGGACAGCGCCAAAGCAGGAAAAGTCACATCTGCTGGAATGTATTTCCTTGGTTTTCCAACTTTTCGGTTGGACCAAACAGTGA ACTCGCTTGCGGCTGCCAAGGATGCTGATGCTGCCTTCTTCAAAAGGCTGGACGGCTTTCAACCATGCGAAATAAATGAATTGAAGGCTGGAACACATGT TTTTGCTGTCTATGGTGACAACTTCTTCAAAAGTATAAGCTACACAATAGAAGCCATTTGTGGTGCACGTTTTAGTGAAGAAAAGGAGAACCTAAGAGCC GTTGAAGCTGAAATTCTCGAGAAGAGGGCAGAAATATCGAAGTTCGAAACTGAATATAGGGAGGTTTTGGCGCAGTTCACACAAATGACAACCAGATACG CCCAGGAAATGCAAGAGATCGACGAGCTTCTAAAACAAAGGAACGAAATTCATGCAGCCTATACTGCTGCACCAGCGATGAAGCGGAGTATGAGTAAAAG TAGGAGCAGAGGCTCCTTCAAAGAGAGCCAAGAAGACGGACAGCCGAAAGAAAAGAAATCATCATCGACAAGAGATAGACCAAAGAAGAAGAAATGGTTC AACATCCACCAGTTAAAAGTAGAAAAAAGAAAGGCTTGCTAA
AA sequence Show only first row Show all	>Lus10029202 pacid=23151695 polypeptide=Lus10029202 locus=Lus10029202.g ID=Lus10029202.BGIv1.0 annot-version=v1.0 MPANRSKSEKEDAAGKNLRRDPYEVLGVSRNSSDQEIKSAYRKMALKYHPDKNANDPEAADMFKEATFSYDILSDPEKRRQFDHAGFAAVEAENQDLELD LSSLGTMNTMFAALFSKLGVPIKTTVSANILEEALNGAVSVSPLELGHPISRKVEKQSAHFYSVKISEEEAKAGFVCRVHSTDKSKFKLLYFDQEDNRGL SLALQEDSAKAGKVTSAGMYFLGFPTFRLDQTVNSLAAAKDADAAFFKRLDGFQPCEINELKAGTHVFAVYGDNFFKSISYTIEAICGARFSEEKENLRA VEAEILEKRAEISKFETEYREVLAQFTQMTTRYAQEMQEIDELLKQRNEIHAAYTAAPAMKRSMSKSRSRGSFKESQEDGQPKEKKSSSTRDRPKKKKWF NIHQLKVEKRKAC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24120		ARL1	ARG1-like 1 (.1)		Lus10029202 [exp]	0	1
AT1G24120		ARL1	ARG1-like 1 (.1)		Lus10010717 [exp]	1.0	0.8805
AT5G19390			Rho GTPase activation protein ...		Lus10036047 [exp]	5.9	0.8389
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Lus10020468 [exp]	5.9	0.8353
AT3G26670			Protein of unknown function (D...		Lus10041504 [exp]	8.5	0.8330
AT2G15860			unknown protein		Lus10023852 [exp]	11.0	0.7961
AT5G59020			Protein of unknown function (D...		Lus10040721 [exp]	13.1	0.8394
AT1G59750	ARF	ARF1	auxin response factor 1 (.1.2....		Lus10024455 [exp]	13.8	0.8056
AT3G16630		ATKINESIN-13A, ...	P-loop containing nucleoside t...		Lus10002876 [exp]	15.3	0.8617
AT5G43160		QWRF9	QWRF domain containing 9, Fami...		Lus10007759 [exp]	15.5	0.7930
AT4G34610	HD	BLH6	BEL1-like homeodomain 6 (.1.2)		Lus10017481 [exp]	16.2	0.8001

Compare expression of checked genes

Lus10029202 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.