Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29880 1051 / 0 glycyl-tRNA synthetase / glycine--tRNA ligase (.1) AT1G29870 562 / 0 tRNA synthetase class II (G, H, P and S) family protein (.1) AT3G44740 246 / 2e-76 Class II aaRS and biotin synthetases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042096 [exp] 1192 / 0 AT1G29880 1174 / 0.0 glycyl-tRNA synthetase / glycine--tRNA ligase (.1) Lus10008792 [exp] 1179 / 0 AT1G29880 1057 / 0.0 glycyl-tRNA synthetase / glycine--tRNA ligase (.1) Lus10036929 [exp] 187 / 3e-50 AT3G26040 319 / 1e-102 HXXXD-type acyl-transferase family protein (.1) Lus10036930 [exp] 123 / 3e-33 AT1G29880 92 / 4e-23 glycyl-tRNA synthetase / glycine--tRNA ligase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G067800 [exp] 1084 / 0 AT1G29880 1203 / 0.0 glycyl-tRNA synthetase / glycine--tRNA ligase (.1) Potri.003G162300 [exp] 1079 / 0 AT1G29880 1192 / 0.0 glycyl-tRNA synthetase / glycine--tRNA ligase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0600 [flax] [poplar] S15_NS1 PF00458 [flax] [poplar] WHEP-TRS WHEP-TRS domain CL0458 [flax] [poplar] IIaaRS-ABD PF03129 [flax] [poplar] HGTP_anticodon Anticodon binding domain CL0040 [flax] [poplar] tRNA_synt_II PF00587 [flax] [poplar] tRNA-synt_2b tRNA synthetase class II core domain (G, H, P, S and T)
Representative CDS sequence Show only first row Show all	>Lus10029203 pacid=23151870 polypeptide=Lus10029203 locus=Lus10029203.g ID=Lus10029203.BGIv1.0 annot-version=v1.0 ATGGATGCAGCAGCGGCAGCTGATGAGGACTCGCTCCGCCGTGCTCTCGCGGAAAAGCAGTCCGCAGTGGAAGTGCAGGGGGACAAGGTCCGTGCCTTGA AAGCTGCTAAAGCCGACGTGTCAGAGATCGAGTCTGCGATCAAATCGCTGAACGCGCTGAAGCTGGAGAAGTCGTCCGTCGAGAAGCAGCTTTCGTCTGG CGACGTAAGCTCTTCCAGGGAGGCGTTCCGTCAGGCAGTCGAGAACACTCTTAAACGGAAACATTTCTACTTTCCGTCTTACAAGATTTACGGAGGTGTT GCTGGTCTCTACGACTATGGACCTCCTGGTTACGATGTGGAGTTGAATGTCCTCGCGCTCTGGCGCCAGCATTTTGTGTTGGAGGAGGACATGTCGGCAG TGCGCTGCACAAGTGTAACACCAGAGGTAGTACTCAAAGCATCAGGTCATGTGGATAAATTCACAGATCTCATGGTTAAGGATGAGAAAACAGGAACCTG CTACCGAGCTGATCACTTGCTCAAGGACTTCTGCAATGAGAAGCTTCAGAAAGATGTTACCTTAACTGCGGACAAGTCGAAAGAACTTAAACATATACTT GCTGTTTTGGATGATCTCTCTTCTGAGGAGCTCGGTGCCAAGATCAAGGAGTATGGCATTACAGCTCCAGATACAAAAAACCCGCTTTCAAATCCCTATC CAATCAACTTGATGTTTCAAACTTCCATTGGCCCCTCAGGGTTGAGATCCGGCTTCATGCGTCCTGAATTGGCACAAGGGATATTTGTGAATTTCATGGA GTTGTACGAATACAATGGGAGAAAACTTCCGTTCGCTGCTGCTCAGATTGGCCAGGCCTTTAGAAATGAGATTTCTCCCAGACAAGGCCTACTGAGAGTT CTGGAGTTCACATTAGCAGAGATTGAGCACTTTGTCGACCCCGAAGACAAGAAACACCCAAAGTTTGCACAAGTTGCAAATCTAGAGTTCCTGATGTTCC CTAGGGAAGAGCAGATGTCTGGGCAGTCAGCAAAGCTAATTCAACTTGGTGATGCGGTATCAAAGGGTATTGTCAACAACGAAACTCTTGGATATTTCAT CGGCAGAGTTTACCTCTTCCTAACTCTACTCGGTATCGACAAGAACCGGTTACGATTCCGGCAGCATCTTGCAAATGAAATGGCACATTATGCTGTCGAC TGTTGGGATGCAGAGATCGAATGTTCATATGGTTGGATCGAGTGTGTTGGTATTGCAGATAGGTCTGCATTTGATCTGCGTGCCCATTCGGAAAAGAGTG GTGTTGCGCTTGTTGCCGCTGAAAAGTTTGCAGTACCTCGAGAAGTCGAGGAATTGGTAATTACGCCATTGATGAAGGAGCTTGGCCGTGCATTTAAGGG TAACCAAAAGAACATCGTTGAAGCCTTGGAGGCAATGCCAGAAAAAGAAGCCATGGAAATGAAGGCTGCTCTCGAATCCAAAGGGGAGACGGAGTTGTAC GTCTGCACTCTCAGCAAAAACGTTGTCATCAAGAAGAACATGCTTTCTATCTCTAAGGAGAAGAAAAACGTACACCAAAGGGTCTTCACACCTTCAGTCA TTGAGCCATCTTTTGGCATTGGACGCATCATATACTGCCTCTTCGAACACTCCTTCTACACCAGGCCTAGCAAAGCCGGGGACCAACAGCTGAACGTGTT CCGTTTCCCTCCTATCGTCGCCCCGATCAAATGCTCCGTGTTCCCCCTCGTCCAGAACCAACAGTTCGAGGACGTCGCCAAAACCATTTCCAGGTCGTTG ACTGTTGCTGGAATCTCCCACAAGATCGACGTCACAGGTGCCTCGATAGGGAAGCGGTACGCTAGAACAGACGAGTTGGGTGTACCCTTTGCCATCACGG TTGACTCAGCTGATTCGGTTACAATTAGGGAGAGGGACAGCAGGGATCAGATCAGAGTGAAGCTGGAAGATGTGGCGTCAGTTGTGAAGTCGCTATGTGA TGGCCAGACCACATGGGAATTGAACAACAAGTTGGTTGAAGAGAAAAACAAGTTGGCTGAAGAGAATCACCAACTTCAAGAGAAACCTGCTCAATTGGAG GATAATGTAACCGAGCTTAAGACTAGACTGGAAGCAAGCGAGGCTAGACATGTGATAGCGGCTGCGAAAATTGCTGAGCTTGAGAAGTTGTTGCACGGAA TGCTGGCTAAAAATGAAGGAGGCTTCTGA
AA sequence Show only first row Show all	>Lus10029203 pacid=23151870 polypeptide=Lus10029203 locus=Lus10029203.g ID=Lus10029203.BGIv1.0 annot-version=v1.0 MDAAAAADEDSLRRALAEKQSAVEVQGDKVRALKAAKADVSEIESAIKSLNALKLEKSSVEKQLSSGDVSSSREAFRQAVENTLKRKHFYFPSYKIYGGV AGLYDYGPPGYDVELNVLALWRQHFVLEEDMSAVRCTSVTPEVVLKASGHVDKFTDLMVKDEKTGTCYRADHLLKDFCNEKLQKDVTLTADKSKELKHIL AVLDDLSSEELGAKIKEYGITAPDTKNPLSNPYPINLMFQTSIGPSGLRSGFMRPELAQGIFVNFMELYEYNGRKLPFAAAQIGQAFRNEISPRQGLLRV LEFTLAEIEHFVDPEDKKHPKFAQVANLEFLMFPREEQMSGQSAKLIQLGDAVSKGIVNNETLGYFIGRVYLFLTLLGIDKNRLRFRQHLANEMAHYAVD CWDAEIECSYGWIECVGIADRSAFDLRAHSEKSGVALVAAEKFAVPREVEELVITPLMKELGRAFKGNQKNIVEALEAMPEKEAMEMKAALESKGETELY VCTLSKNVVIKKNMLSISKEKKNVHQRVFTPSVIEPSFGIGRIIYCLFEHSFYTRPSKAGDQQLNVFRFPPIVAPIKCSVFPLVQNQQFEDVAKTISRSL TVAGISHKIDVTGASIGKRYARTDELGVPFAITVDSADSVTIRERDSRDQIRVKLEDVASVVKSLCDGQTTWELNNKLVEEKNKLAEENHQLQEKPAQLE DNVTELKTRLEASEARHVIAAAKIAELEKLLHGMLAKNEGGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29880			glycyl-tRNA synthetase / glyci...		Lus10029203 [exp]	0	1
AT3G13920		RH4, TIF4A1, EI...	eukaryotic translation initiat...		Lus10017153 [exp]	1.4	0.9593
AT4G04790			Tetratricopeptide repeat (TPR)...		Lus10043070 [exp]	2.0	0.9419
AT4G19006			Proteasome component (PCI) dom...		Lus10012120 [exp]	2.4	0.9496
AT3G13224			RNA-binding (RRM/RBD/RNP motif...		Lus10043154 [exp]	3.5	0.9383
AT5G16750		TOZ	TORMOZEMBRYO DEFECTIVE, Transd...		Lus10012706 [exp]	4.2	0.9428
AT3G23940			dehydratase family (.1.2)		Lus10034822 [exp]	4.6	0.9350
AT3G16310			mitotic phosphoprotein N' end ...		Lus10011431 [exp]	5.2	0.9325
AT1G80620			S15/NS1, RNA-binding protein (...		Lus10009249 [exp]	8.4	0.9306
AT2G41500		EMB2776, LIS	LACHESIS, WD-40 repeat family ...		Lus10021059 [exp]	10.1	0.9212
AT5G50320		EAST1, AtELP3, ...	HISTONE ACETYLTRANSFERASE OF T...		Lus10014792 [exp]	11.0	0.9243

Compare expression of checked genes

Lus10029203 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.