Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67030 59 / 2e-10 C2H2ZnF ZFP6 zinc finger protein 6 (.1) AT1G68360 56 / 4e-09 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT3G58070 51 / 1e-07 C2H2ZnF GIS GLABROUS INFLORESCENCE STEMS, C2H2 and C2HC zinc fingers superfamily protein (.1) AT2G41940 51 / 2e-07 C2H2ZnF ZFP8 zinc finger protein 8 (.1) AT5G06650 50 / 2e-07 C2H2ZnF GIS2 GLABROUS INFLORESCENCE STEMS 2, C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G10480 49 / 5e-07 C2H2ZnF ZFP5 zinc finger protein 5 (.1) AT5G14010 47 / 1e-06 C2H2ZnF KNUCKLES, KNU KNUCKLES, C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G01860 47 / 2e-06 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G80730 47 / 2e-06 C2H2ZnF ATZFP1, ZFP1 ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, zinc-finger protein 1 (.1) AT1G24625 47 / 4e-06 C2H2ZnF ZFP7 zinc finger protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017609 [exp] 54 / 9e-09 AT1G67030 113 / 2e-31 zinc finger protein 6 (.1) Lus10033567 [exp] 53 / 2e-08 AT1G67030 113 / 2e-31 zinc finger protein 6 (.1) Lus10017229 [exp] 52 / 3e-08 AT3G58070 120 / 5e-34 GLABROUS INFLORESCENCE STEMS, C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10022816 [exp] 50 / 1e-07 AT5G14010 65 / 1e-13 KNUCKLES, C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10016238 [exp] 50 / 2e-07 AT3G58070 118 / 1e-32 GLABROUS INFLORESCENCE STEMS, C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10018328 [exp] 50 / 3e-07 AT5G10970 94 / 6e-24 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10017125 [exp] 49 / 3e-07 AT5G10970 95 / 4e-24 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10021081 [exp] 50 / 4e-07 AT3G58070 147 / 3e-43 GLABROUS INFLORESCENCE STEMS, C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10035169 [exp] 47 / 2e-06 AT1G66140 66 / 4e-14 zinc finger protein 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G193400 [exp] 73 / 3e-15 AT1G10480 69 / 9e-14 zinc finger protein 5 (.1) Potri.004G097900 [exp] 65 / 1e-12 AT1G67030 100 / 2e-26 zinc finger protein 6 (.1) Potri.017G116300 [exp] 64 / 3e-12 AT1G68360 99 / 6e-25 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.010G036400 [exp] 64 / 5e-12 AT1G10480 69 / 4e-14 zinc finger protein 5 (.1) Potri.006G195100 [exp] 62 / 2e-11 AT3G58070 156 / 4e-47 GLABROUS INFLORESCENCE STEMS, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.010G122400 [exp] 61 / 3e-11 AT1G68360 149 / 2e-44 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.016G060600 [exp] 58 / 5e-10 AT2G41940 155 / 1e-46 zinc finger protein 8 (.1) Potri.008G123100 [exp] 58 / 5e-10 AT1G68360 123 / 4e-34 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.002G199200 [exp] 56 / 2e-09 AT1G67030 71 / 2e-15 zinc finger protein 6 (.1) Potri.010G140700 [exp] 55 / 4e-09 AT5G14010 66 / 9e-14 KNUCKLES, C2H2 and C2HC zinc fingers superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029204 pacid=23151711 polypeptide=Lus10029204 locus=Lus10029204.g ID=Lus10029204.BGIv1.0 annot-version=v1.0 ATGAAAACAACTCTTTCAAACACCCAATACTCCTCCACCGTCGAATCAGCCTCCTCCTCCGGCGAAACCAACAACAGCAACAAGCTCAAGCTGTTCGGAT TCGAGTTCGAGCTCGACCCCAACCCACCCGCTAGTCGAACCACCAAGCCGAACCATTCCGACGAGAGCGTGAACTCATCATCCAACACGGTCACAGACAA AACGACGCCGTTGCTGAAGCGCGTGGAAGGGACGATCAAGAAGCAGCAGGCGGGAAATAGTGGTAGTAAGTTCGAGTGCGAGTATTGTATGAAGGAGTTC GCCAACTCGCAGGCGCTGGGCGGTCACCAGAACGCGCACAAGAAGGAGCGTCTCAGGAAGAAGCGGCTTCAGCTTCAAGCCAGGCGGGCCAACTTCTACC AGCTCCAGTCGGTTTACGGGCCGAACCCGGCCCGGTTGGTTTACGACCCGGCTTGGAGTAGTGACGTGGTGGTGTACGAGGAGGAGGATCAAACGGCTTC GTCGCATCAGATTAGCTTTATGAATGGTGATGATCATCTGGATTATTTGTATGGTAATTATGATCAAGGTGGGTTTACTTTGACGCATCATCGGCCGGTG GTGGGTGGTGGTCGGAGATTTGGGAAGACGACAACGGCGGGCGCCCGCCAGTGGAGATTTGGATCTTCAGTTGAGGTTGCGATGAGGGAATGTTTTTTTT CGGGTTAA
AA sequence Show only first row Show all	>Lus10029204 pacid=23151711 polypeptide=Lus10029204 locus=Lus10029204.g ID=Lus10029204.BGIv1.0 annot-version=v1.0 MKTTLSNTQYSSTVESASSSGETNNSNKLKLFGFEFELDPNPPASRTTKPNHSDESVNSSSNTVTDKTTPLLKRVEGTIKKQQAGNSGSKFECEYCMKEF ANSQALGGHQNAHKKERLRKKRLQLQARRANFYQLQSVYGPNPARLVYDPAWSSDVVVYEEEDQTASSHQISFMNGDDHLDYLYGNYDQGGFTLTHHRPV VGGGRRFGKTTTAGARQWRFGSSVEVAMRECFFSG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68360	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10029204 [exp]	0	1
AT4G12010			Disease resistance protein (TI...		Lus10012246 [exp]	4.8	0.8559
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Lus10013383 [exp]	5.3	0.8198
AT4G19370			Protein of unknown function (D...		Lus10033286 [exp]	8.1	0.7948
AT4G37420			Domain of unknown function (DU...		Lus10030740 [exp]	8.5	0.8025
AT5G36930			Disease resistance protein (TI...		Lus10026845 [exp]	11.6	0.8284
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10034872 [exp]	17.9	0.7837
AT1G56130			Leucine-rich repeat transmembr...		Lus10031199 [exp]	22.0	0.7710
AT3G56360			unknown protein		Lus10034235 [exp]	43.1	0.7878
AT3G15760			unknown protein		Lus10043269 [exp]	43.4	0.7607
					Lus10023285 [exp]	55.5	0.7390

Compare expression of checked genes

Lus10029204 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.