Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24130 288 / 2e-93 Transducin/WD40 repeat-like superfamily protein (.1) AT5G50120 255 / 5e-81 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24530 238 / 5e-74 Transducin/WD40 repeat-like superfamily protein (.1) AT4G34380 199 / 2e-58 Transducin/WD40 repeat-like superfamily protein (.1) AT2G26490 195 / 4e-57 Transducin/WD40 repeat-like superfamily protein (.1) AT1G49450 191 / 2e-55 Transducin/WD40 repeat-like superfamily protein (.1) AT3G50390 188 / 2e-54 Transducin/WD40 repeat-like superfamily protein (.1) AT3G18950 184 / 8e-53 Transducin/WD40 repeat-like superfamily protein (.1) AT3G51930 182 / 1e-52 Transducin/WD40 repeat-like superfamily protein (.1) AT1G47610 174 / 2e-50 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034117 [exp] 273 / 9e-88 AT5G50120 391 / 1e-134 Transducin/WD40 repeat-like superfamily protein (.1) Lus10043466 [exp] 263 / 1e-82 AT5G50120 399 / 3e-136 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011402 [exp] 241 / 4e-75 AT1G24530 406 / 3e-140 Transducin/WD40 repeat-like superfamily protein (.1) Lus10006460 [exp] 237 / 2e-73 AT1G24530 414 / 3e-143 Transducin/WD40 repeat-like superfamily protein (.1) Lus10036881 [exp] 233 / 7e-72 AT1G24530 409 / 5e-141 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011655 [exp] 207 / 7e-62 AT2G26490 604 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10016289 [exp] 205 / 6e-61 AT2G26490 597 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10032868 [exp] 200 / 3e-59 AT2G26490 580 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10022475 [exp] 192 / 4e-56 AT3G50390 536 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G070900 [exp] 281 / 5e-91 AT5G50120 398 / 2e-137 Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G076000 [exp] 281 / 1e-90 AT5G50120 417 / 5e-145 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G050900 [exp] 240 / 2e-74 AT1G24530 483 / 5e-170 Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G109500 [exp] 211 / 6e-63 AT3G18950 555 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G148400 [exp] 195 / 3e-57 AT3G18950 539 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G038400 [exp] 195 / 6e-57 AT2G26490 631 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G131100 [exp] 195 / 2e-56 AT3G50390 535 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G035100 [exp] 193 / 2e-56 AT3G50390 514 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G130400 [exp] 192 / 8e-56 AT2G26490 632 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G202700 [exp] 184 / 2e-53 AT3G51930 531 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10029206 pacid=23151776 polypeptide=Lus10029206 locus=Lus10029206.g ID=Lus10029206.BGIv1.0 annot-version=v1.0 ATGGGACTGATTCCCTGCCGGCCGCCATTACCCTCCATCGAACCAACAGATCAACAAGATTCCAATTCCAATTCCAAATCCCTCCACTCTGAATCCTCCT CCTCTTCCCTTTCAACCCAACTCAGCCTCCCTTCCGTTCCTTCCCTCTCCACATCCACCTCCTCCTCCTCCGCCGTCCGCCACCGCTGCATCGCCACCCT CCACTCCCATTCCACCTCTATATCCTCCCTCGCCCTCTCTCTCGACACCCTCTTCTCCGGCGACAGCGAAATCCTCGCCTGGAATCCAATTCCCTATCCC TCCGATTCTTCCGCCTCCTCCACCACCGTGGCCAAGATCAGCGGCGCGGTTAAATGCTTGGCGGTCTATGAAGATTTAATATTCAGTGGACACCAGGACC GTAAAATCCGAGTGTGGCGGAAAACGAAAAAAGCAGAGTCAGCTCGTAGTGAAAAAACAGAGAGCGCACGTCATCAATACGGCGCCGTGGCGACCCTCCC GACTTTCAACGACAGGATCCGCCGCTGCTTCTCTGCGAAGAACTACGTGGAAGTTCGCCGTCACAAGAAGTCCACGTGGGTCCACCACAACGACGCCGTT TCGGTACTCGCTGTTGCGTTTCCCCTGGTTTACTCTGCCTCCTGGGACCGTTCATTCAAAGTGTGGAGAATCTCCGACTTCAGATGTTTGGAATCCGTCG CCAAAGCACATAATGACGCGATCAACGCGCTGGTCGTCTCCATAGTTGATGGATACGTCTACACCGGATCCGCCGACAAGACGATCAAGGTGTGGAGAAG GAGAGAGAACGATTCGGAGAAGAATAAGATCGTGCATTGCCACGTCGCGACGTTGGAGAAGCACAAGTCGGCGGTGAATGCGCTGGCGGTGAGTGGCGAC GGGAGGGTGCTGTACTCCGGCGCTTGTGATCGGTCGATTATTGTTTGGGAGAAGAGTGGATTTGCCGGCGACGGGGAGGAGGAGGAGGGGGATGTTGTTA TGACGGTGGTGGGGGCGTTGAGGGGACATAAAAGGTCGATTTTGTGCCTGGCGGCGGTGGGGGAGGATATGGTGTGTAGTGGGTCGGCAGATAATACGGT AAGGGTTTGGCGGCGGAGGACGGTTGGGGGGTTGGGGAAGAAGGAGTATTGGTGTGAGAAGGATTATTGGTGTGTGGCGGTTCTTGAAGGGCATCAGAAG CCGGTCAAGTGCTTGGCCATTGATCGGAAGAGAGATGATAATGATGATGATGATGATGATGATGATGGAGGTTGTGATAAGTATGTGGTTTACTCCGGCG GGTTGGACGGCGAAATTAGAGTTTGGAGGATTGAAGTTCCGACTACTTAG
AA sequence Show only first row Show all	>Lus10029206 pacid=23151776 polypeptide=Lus10029206 locus=Lus10029206.g ID=Lus10029206.BGIv1.0 annot-version=v1.0 MGLIPCRPPLPSIEPTDQQDSNSNSKSLHSESSSSSLSTQLSLPSVPSLSTSTSSSSAVRHRCIATLHSHSTSISSLALSLDTLFSGDSEILAWNPIPYP SDSSASSTTVAKISGAVKCLAVYEDLIFSGHQDRKIRVWRKTKKAESARSEKTESARHQYGAVATLPTFNDRIRRCFSAKNYVEVRRHKKSTWVHHNDAV SVLAVAFPLVYSASWDRSFKVWRISDFRCLESVAKAHNDAINALVVSIVDGYVYTGSADKTIKVWRRRENDSEKNKIVHCHVATLEKHKSAVNALAVSGD GRVLYSGACDRSIIVWEKSGFAGDGEEEEGDVVMTVVGALRGHKRSILCLAAVGEDMVCSGSADNTVRVWRRRTVGGLGKKEYWCEKDYWCVAVLEGHQK PVKCLAIDRKRDDNDDDDDDDDGGCDKYVVYSGGLDGEIRVWRIEVPTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24130			Transducin/WD40 repeat-like su...		Lus10029206 [exp]	0	1
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10032026 [exp]	2.2	0.9312
AT1G65610		ATGH9A2 ,KOR2	KORRIGAN 2, ARABIDOPSIS THALIA...		Lus10026863 [exp]	2.4	0.9300
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10039686 [exp]	6.0	0.9137
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10027164 [exp]	10.7	0.8868
AT5G59530			2-oxoglutarate (2OG) and Fe(II...		Lus10033875 [exp]	11.2	0.9068
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10014108 [exp]	11.5	0.9054
AT5G42180		PER64	peroxidase 64, Peroxidase supe...		Lus10034547 [exp]	15.1	0.9058
AT1G68810	bHLH	bHLH030	basic helix-loop-helix (bHLH) ...		Lus10001885 [exp]	18.8	0.8892
AT2G18150			Peroxidase superfamily protein...		Lus10028337 [exp]	20.7	0.9110
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10022550 [exp]	22.4	0.8750

Compare expression of checked genes

Lus10029206 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.