Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70170 139 / 9e-40 MMP matrix metalloproteinase (.1) AT1G24140 130 / 3e-36 Matrixin family protein (.1) AT1G59970 121 / 3e-33 Matrixin family protein (.1) AT2G45040 117 / 1e-31 Matrixin family protein (.1) AT4G16640 111 / 2e-29 Matrixin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030662 [exp] 136 / 1e-38 AT1G59970 338 / 9e-115 Matrixin family protein (.1) Lus10010719 [exp] 113 / 2e-30 AT1G70170 305 / 3e-102 matrix metalloproteinase (.1) Lus10028180 [exp] 108 / 7e-29 AT2G45040 278 / 9e-93 Matrixin family protein (.1) Lus10004728 [exp] 102 / 5e-26 AT4G16640 350 / 2e-119 Matrixin family protein (.1) Lus10028955 [exp] 97 / 1e-23 AT4G16640 360 / 3e-123 Matrixin family protein (.1) Lus10007478 [exp] 93 / 2e-22 AT4G16640 345 / 2e-117 Matrixin family protein (.1) Lus10032175 [exp] 79 / 2e-17 AT1G59970 224 / 3e-71 Matrixin family protein (.1) Lus10014512 [exp] 78 / 4e-17 AT1G59970 221 / 6e-70 Matrixin family protein (.1) Lus10005605 [exp] 76 / 3e-16 AT1G24140 223 / 9e-71 Matrixin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G104600 [exp] 140 / 3e-40 AT1G24140 393 / 5e-136 Matrixin family protein (.1) Potri.015G103900 [exp] 138 / 3e-39 AT1G24140 381 / 3e-131 Matrixin family protein (.1) Potri.014G058200 [exp] 113 / 5e-30 AT2G45040 358 / 3e-123 Matrixin family protein (.1) Potri.001G157500 [exp] 112 / 1e-29 AT2G45040 349 / 2e-119 Matrixin family protein (.1) Potri.003G077400 [exp] 107 / 4e-27 AT2G45040 330 / 1e-110 Matrixin family protein (.1) Potri.013G100400 [exp] 100 / 1e-25 AT1G59970 247 / 4e-80 Matrixin family protein (.1) Potri.013G033200 [exp] 97 / 4e-24 AT1G24140 246 / 2e-79 Matrixin family protein (.1) Potri.008G027900 [exp] 90 / 1e-21 AT1G59970 192 / 9e-59 Matrixin family protein (.1) Potri.008G027600 [exp] 89 / 2e-21 AT1G59970 213 / 8e-67 Matrixin family protein (.1) Potri.019G073700 [exp] 86 / 6e-20 AT1G59970 213 / 7e-67 Matrixin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF00413 [flax] [poplar] Peptidase_M10 Matrixin
Representative CDS sequence Show only first row Show all	>Lus10029207 pacid=23151853 polypeptide=Lus10029207 locus=Lus10029207.g ID=Lus10029207.BGIv1.0 annot-version=v1.0 ATGAACTCCGGGAAGCCTGATTCGGAATCGAACGGCACGACGGCGACGCACTTCCACACTGTCGGGAAGTACACGTTCTTCCCCGGGGAGCCGCGGTGGC TGGCGAGCCATCGGGGTACCACCTACGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTCCTCTGCGGCGGGCAGTTAAGGGGTGT GGCCCCCCCCGCTTTGGACCGGTGGTCGGAGGTGGCGTCGTTGACTTTCACGGAGACGGACAATTATCCTACCGCCGACATCCGGGTCGGATTCCTGAGC GGCGACCACGGCGACGGGGAGCCGTTCGACGGCGTGTTGGGAACCCTCGCCCACGCGTTCTCCCCTCCGAGCGGGCGGCTCCACCTCGACGGCGACGAGG ACTGGGTGGTCAGCGGGTTGAGCGCCGACTCTGCTCTGTCGGTTGAGCGCCGACTCTGCGCTGTCCTCGGCGGTGGATCTCGAGTCGGTTGCGGTTCACG AGATCGGGCATTTGTTGGGACTGGGTCACTCGTCGGAGCCCGATGCGATAATGTTCCCGACGATTTCTTCACGGACCAGAAAAGTTGA
AA sequence Show only first row Show all	>Lus10029207 pacid=23151853 polypeptide=Lus10029207 locus=Lus10029207.g ID=Lus10029207.BGIv1.0 annot-version=v1.0 MNSGKPDSESNGTTATHFHTVGKYTFFPGEPRWLASHRGTTYXXXXXXXXXXXXXXXLLCGGQLRGVAPPALDRWSEVASLTFTETDNYPTADIRVGFLS GDHGDGEPFDGVLGTLAHAFSPPSGRLHLDGDEDWVVSGLSADSALSVERRLCAVLGGGSRVGCGSRDRAFVGTGSLVGARCDNVPDDFFTDQKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70170		MMP	matrix metalloproteinase (.1)		Lus10029207 [exp]	0	1
AT5G10530			Concanavalin A-like lectin pro...		Lus10020456 [exp]	4.0	0.9759
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10024076 [exp]	6.3	0.9651
AT4G36990	HSF	AT-HSFB1, ATHSF...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10009351 [exp]	6.3	0.9758
AT1G45063			copper ion binding;electron ca...		Lus10038098 [exp]	7.3	0.9579
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10013594 [exp]	7.5	0.9707
AT1G11300			protein serine/threonine kinas...		Lus10023391 [exp]	9.0	0.9735
AT2G27510		ATFD3	ferredoxin 3 (.1)		Lus10004870 [exp]	10.6	0.9626
AT2G38740			Haloacid dehalogenase-like hyd...		Lus10030929 [exp]	11.4	0.9635
AT5G08790	NAC	ATAF2, ANAC081	Arabidopsis NAC domain contain...		Lus10020883 [exp]	11.5	0.9540
AT2G41860		CPK14	calcium-dependent protein kina...		Lus10025528 [exp]	12.2	0.9628

Compare expression of checked genes

Lus10029207 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.