Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59960 407 / 5e-143 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G59950 388 / 9e-136 NAD(P)-linked oxidoreductase superfamily protein (.1) AT2G37790 284 / 8e-95 AKR4C10 Aldo-keto reductase family 4 member C10, NAD(P)-linked oxidoreductase superfamily protein (.1) AT2G37770 269 / 4e-89 ChlAKR, AKR4C9 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) AT5G62420 266 / 9e-88 NAD(P)-linked oxidoreductase superfamily protein (.1) AT2G37760 258 / 7e-85 AKR4C8 Aldo-keto reductase family 4 member C8, NAD(P)-linked oxidoreductase superfamily protein AT3G53880 254 / 2e-83 AKR4C11 Aldo-keto reductase family 4 member C11, NAD(P)-linked oxidoreductase superfamily protein (.1) AT5G01670 236 / 5e-76 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) AT2G21260 193 / 1e-59 NAD(P)-linked oxidoreductase superfamily protein (.1) AT2G21250 193 / 2e-59 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010720 [exp] 668 / 0 AT1G59960 410 / 2e-144 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10030946 [exp] 339 / 3e-116 AT1G59960 317 / 1e-107 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10011056 [exp] 328 / 3e-112 AT1G59960 325 / 8e-111 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10027216 [exp] 271 / 1e-89 AT5G62420 429 / 2e-152 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10010885 [exp] 270 / 2e-89 AT2G37770 502 / 0.0 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Lus10031162 [exp] 264 / 5e-87 AT5G62420 431 / 1e-152 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10031739 [exp] 261 / 8e-86 AT5G62420 425 / 2e-150 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10010884 [exp] 259 / 2e-85 AT2G37770 484 / 5e-174 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Lus10024353 [exp] 254 / 4e-83 AT2G37770 491 / 1e-176 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G193100 [exp] 513 / 0 AT1G59960 420 / 3e-148 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.005G097000 [exp] 446 / 8e-159 AT1G59960 405 / 2e-142 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.001G125400 [exp] 265 / 1e-87 AT5G62420 445 / 2e-158 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.016G102032 [exp] 262 / 3e-86 AT2G37770 424 / 2e-150 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.006G090600 [exp] 254 / 3e-83 AT2G37770 503 / 0.0 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.016G102300 [exp] 248 / 9e-81 AT2G37770 398 / 5e-140 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.016G102100 [exp] 244 / 4e-79 AT2G37770 400 / 5e-141 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.017G070600 [exp] 239 / 2e-77 AT2G37770 438 / 6e-156 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.010G036801 [exp] 232 / 1e-76 AT1G59960 187 / 2e-59 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.012G039901 [exp] 205 / 6e-66 AT1G59960 201 / 1e-64 NAD(P)-linked oxidoreductase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00248 [flax] [poplar] Aldo_ket_red Aldo/keto reductase family
Representative CDS sequence Show only first row Show all	>Lus10029208 pacid=23151725 polypeptide=Lus10029208 locus=Lus10029208.g ID=Lus10029208.BGIv1.0 annot-version=v1.0 ATGGATACGAATCCGGCGACCAGCGTTCCAGAGGTGATACTGAGCTCCAGCGGGCGGAGGATGCCGTTGCTGGGAATGGGCACGGCGACTTCACCTCTGA TCGGATCCGCCGCCACAAAATCCGCCGTCGTCCACGCGATCGAGCTCGGTTACCGCCACTTCGACACAGCGACGCTCTACCAGACGGAGGAGCCGCTCGG CGAAGCCATCGCCGAAGCGATCTCTCTCGGATTGATCAAATCCCGTGACGAGCTCTTCGTCACCTCCAAGCTCTGGTGCAGCGACGCACACGCCGATCTC GTCCTCCTCGCCCTCCAGAAGAGCCTCCATCATCTTCAGCTGGAGTATCTGGATCTGTATCTGATTCACTGGCCGGTGAGTTCTCGGCCGGGGACCTACG AGTTTCCGATCAAGAAGGAAGATTTCATGGCTATGGATGTCGGAGCGGTATGGGATGCGATGGAGGAGTGTCAGAATATTGGGCTGACGAAGAACATTGG TGTCAGCAATTTCACTTGTAAGAAGCTTACGGATCTCCTCGCCATTGCCAAGATCCCACCTGCTGTGAATCAAGTAGAGATAAACCCACTGTGGCAACAA AAGAAGCTGAGGGATTACTGCAAGTCGAATGGGATAGTGCTGAGTGCATACGCTCCACTGGGAGCTAAAGGCACCATGTGGGGAAGCAACAGGGTCCTGG AAAATGAAGTCCTCGGAGAAATCGCCAAGTCCAAAGGGAAAACTGTTGCTCAGGTCTGCCTGAGATGGGCGTACGAGCTGGAGGTTTGCGTGGTGGTGAA GAGCTTCAACCAGGAAAGGATGAAGGAGAATCTCGACATCTTCAGCTGGGCGTTCTCCGAGGAAGAGAACAAGAAGCTAGCAGAGATCCCTCAAAGTAGA GGATGCTTGGGACAGGATTACATCTCCGACCAAGGTCCCTTCAAGACGATTGAGGAGCTCTGGGATGATGAAATGTGA
AA sequence Show only first row Show all	>Lus10029208 pacid=23151725 polypeptide=Lus10029208 locus=Lus10029208.g ID=Lus10029208.BGIv1.0 annot-version=v1.0 MDTNPATSVPEVILSSSGRRMPLLGMGTATSPLIGSAATKSAVVHAIELGYRHFDTATLYQTEEPLGEAIAEAISLGLIKSRDELFVTSKLWCSDAHADL VLLALQKSLHHLQLEYLDLYLIHWPVSSRPGTYEFPIKKEDFMAMDVGAVWDAMEECQNIGLTKNIGVSNFTCKKLTDLLAIAKIPPAVNQVEINPLWQQ KKLRDYCKSNGIVLSAYAPLGAKGTMWGSNRVLENEVLGEIAKSKGKTVAQVCLRWAYELEVCVVVKSFNQERMKENLDIFSWAFSEEENKKLAEIPQSR GCLGQDYISDQGPFKTIEELWDDEM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G59960			NAD(P)-linked oxidoreductase s...		Lus10029208 [exp]	0	1
AT5G04020			calmodulin binding (.1)		Lus10035417 [exp]	2.0	0.7455
AT5G24240			Phosphatidylinositol 3- and 4-...		Lus10022411 [exp]	4.0	0.7690
AT1G75450		ATCKX6, ATCKX5,...	CYTOKININ OXIDASE 6, ARABIDOPS...		Lus10024289 [exp]	6.2	0.7352
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10019444 [exp]	10.0	0.7247
AT3G01900		CYP94B2	"cytochrome P450, family 94, s...		Lus10041562 [exp]	14.7	0.7125
AT1G54740			Protein of unknown function (D...		Lus10029969 [exp]	20.5	0.7351
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10004085 [exp]	24.3	0.7015
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Lus10010821 [exp]	34.6	0.6768
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10008600 [exp]	38.2	0.7076
AT1G75170			Sec14p-like phosphatidylinosit...		Lus10010804 [exp]	72.7	0.6540

Compare expression of checked genes

Lus10029208 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.