Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70160 872 / 0 unknown protein AT4G27020 744 / 0 unknown protein AT5G54870 722 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010721 [exp] 1069 / 0 AT1G70160 880 / 0.0 unknown protein Lus10032644 [exp] 729 / 0 AT4G27020 868 / 0.0 unknown protein Lus10040054 [exp] 723 / 0 AT4G27020 868 / 0.0 unknown protein Lus10043107 [exp] 702 / 0 AT4G27020 849 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G036900 [exp] 923 / 0 AT1G70160 852 / 0.0 unknown protein Potri.011G137700 [exp] 748 / 0 AT4G27020 894 / 0.0 unknown protein Potri.001G424500 [exp] 737 / 0 AT4G27020 879 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029209 pacid=23151684 polypeptide=Lus10029209 locus=Lus10029209.g ID=Lus10029209.BGIv1.0 annot-version=v1.0 ATGCCTAACTCATCATGTCCGACCAGAGCACATCTACTGCTCCTTCTATTCTGCATCTTAGGGTTCGGTTCTGATTACTACGTTCACGCGATCAAGGTCC CCTTCAGGGTCAACGATGTGCTCCCGGTGCTTCCTGGTCAAGTTTCTTGGCCGGTTCTGAACAACCTCCACAGTGCGGTTGACTTGATGCCCTATTACGT CGGATCGGTAACTCCCGACAACGGGACGATCCAGTGGAAAGGAACTTGCTTCCATGACAATGAAGCTCGGATTGACTTAACCGAGGGCGATCGTGAAGAG CCTGGTTTGGGCGGTGGCATGCTCTACCTTAAGACATCTGCAGCACATAGTTGGACATGTATGGACTTGTATGTATTTGCTACACCGTACAGGGTTACAT GGGATTACTACTTTGCTGCCAGGGAACACACGCTGAAGTTCGATTCGTGGGAGGAAAAAGCGGAGATGGAATATGTGAAGCAGCATGGGGTTTCGGTGTT TCTGATGCCAGCTGGGATGTTGGGGACTATGCTCTCTTTAGTAGATGTTCTCCCGTTGTTCTCTAACACAGGATGGGGTCAGAGCTCTAACTTAGCTTTT CTAGAAAAGCATATGGGTGCCAATTTCAAAAAGCGACCTCAACCATGGCAATCGACCATTAACCCTGACGATGTTCACTCCGGTGACTTCCTTGCTGTTT CGAAGATCCGTGGACGGTGGGGTGGGTTCGAGACTTTGGAGAAATGGGTGACCGGTGCATTTGCTGGTCATACAGCAGTTTGCCTGAAGGATGAGGAAGG GAATCTTTGGGTTGGTGAATCAGGGCACGAGAACGAAAAGTCTCAGGGTGAAGAGGTCATAGCAATTATTCCATGGAACAAATGGTGGGAGTTATCGTTA AAGGATGATTCCAATCCGCAAATTTCTTTGCTTCCCTTGCATCCGGATGTTCGTGCGAGATTCAATAACACTGCAGCTTGGGAATATGCTCGGAGCATGA CTGGCAAGCCGTATGGTTACCATAACATGATATTCAGTTGGATCGACACAGTTGCTGAGAACTATCCGCCACCTCTTGATGCTCACTTGGTTATTTCTGT CATGTCGATGTGGACCCGGGTGCAGCCAGCATATGCTGCAAACATGTGGAACGAAGCTTTAAATAAACGACTGGGAACTAAGGATTTGGATTTGTATGGA ATCCTCGCTGAGGTAGAAAAGCGGGGCATTACCTTCGACGAGCTGCTCACTCAACCCGAACAAGACGAATGGATTTATAGCGACGGGAAATCCACGACCT GTGTTGCTTTCATCCTGCAAATGTACAAGGAGGCTGGAGTATTCGATCCCATTGGCAGCTCTATCCAAGTGACTGAATTCACTATTCGCGATGCATACAT GCTTAAGATATTCGAGAACAACCAAACTCGTCTCCCTAGCTGGTGCAATTGCGGGGATGCTCAGCTCACATTCTGTCAAATCCTCGGCGAGTACTGGATG GAGTTGCCCGAGTACAACAGCATCGAGCCATATCCCAAGATGAACGAGAACTGTCCATCTCTACCTCCCATTTACGACAGGCCCTACCAGTGTTGA
AA sequence Show only first row Show all	>Lus10029209 pacid=23151684 polypeptide=Lus10029209 locus=Lus10029209.g ID=Lus10029209.BGIv1.0 annot-version=v1.0 MPNSSCPTRAHLLLLLFCILGFGSDYYVHAIKVPFRVNDVLPVLPGQVSWPVLNNLHSAVDLMPYYVGSVTPDNGTIQWKGTCFHDNEARIDLTEGDREE PGLGGGMLYLKTSAAHSWTCMDLYVFATPYRVTWDYYFAAREHTLKFDSWEEKAEMEYVKQHGVSVFLMPAGMLGTMLSLVDVLPLFSNTGWGQSSNLAF LEKHMGANFKKRPQPWQSTINPDDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDEEGNLWVGESGHENEKSQGEEVIAIIPWNKWWELSL KDDSNPQISLLPLHPDVRARFNNTAAWEYARSMTGKPYGYHNMIFSWIDTVAENYPPPLDAHLVISVMSMWTRVQPAYAANMWNEALNKRLGTKDLDLYG ILAEVEKRGITFDELLTQPEQDEWIYSDGKSTTCVAFILQMYKEAGVFDPIGSSIQVTEFTIRDAYMLKIFENNQTRLPSWCNCGDAQLTFCQILGEYWM ELPEYNSIEPYPKMNENCPSLPPIYDRPYQC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70160			unknown protein		Lus10029209 [exp]	0	1
AT1G70160			unknown protein		Lus10010721 [exp]	1.0	0.9644
AT1G18460			alpha/beta-Hydrolases superfam...		Lus10042972 [exp]	1.7	0.9403
AT5G19140		AtAILP1, AILP1	Aluminium induced protein with...		Lus10010505 [exp]	2.0	0.9393
AT3G43230			RING/FYVE/PHD-type zinc finger...		Lus10027659 [exp]	2.2	0.9364
AT4G19860			alpha/beta-Hydrolases superfam...		Lus10018310 [exp]	2.4	0.9498
AT1G21650		SECA2	Preprotein translocase SecA fa...		Lus10028560 [exp]	5.0	0.9029
AT1G58030		CAT2	cationic amino acid transporte...		Lus10020322 [exp]	5.3	0.9294
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Lus10043381 [exp]	6.3	0.9181
AT3G54840		ARA6, AtRABF1, ...	Ras-related small GTP-binding ...		Lus10017462 [exp]	6.3	0.9289
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10018663 [exp]	6.5	0.9325

Compare expression of checked genes

Lus10029209 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.