Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70150 428 / 7e-150 zinc ion binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010722 [exp] 647 / 0 AT1G70150 473 / 1e-167 zinc ion binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G037600 [exp] 465 / 4e-164 AT1G70150 447 / 2e-157 zinc ion binding (.1) Potri.011G001800 [exp] 134 / 3e-34 AT4G21890 350 / 3e-117 unknown protein Potri.011G095200 [exp] 47 / 2e-05 AT1G17110 799 / 0.0 ubiquitin-specific protease 15 (.1.2) Potri.001G378900 [exp] 45 / 0.0001 AT1G17110 848 / 0.0 ubiquitin-specific protease 15 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0175 [flax] [poplar] TRASH PF01753 [flax] [poplar] zf-MYND MYND finger
Representative CDS sequence Show only first row Show all	>Lus10029210 pacid=23151864 polypeptide=Lus10029210 locus=Lus10029210.g ID=Lus10029210.BGIv1.0 annot-version=v1.0 ATGCCGTCGTCAGCAGCACGATCACGGCAGCCGGCTGAAATGGAGTGCTCCGGAAAGGGAACCAGAGGAAGGTGCGTAGGTCCAGCGACGAGAAGATGTG GAAGCTGCGGCGCCGTCGCTTATTGCTCCGTCTCCCATCAACTTTCGCATTGGGATTACCATAAGCTAGAGTGTGAGAGGCTGGAGCTGCAAATGAAGCT CGTTGAAGTCCTGAACGAGTTCCCTTTCACCTTCTCCGACGAAGCTACGTTGGAGGTGTTTCAAAAGCAAGAGACTAGGTGTTCCTTTTTTAGCAAAAGA GGCATCCATGGATTGGGAATGTGGAGATATGAATGCGGATGTGGGGAATCTCTTGCAGTCACTCACTCCACAAGGTTTGAGCACCAAGGTTGGGATCTTC CTGGAGAGCTATGCCCTTGTCATGGGCCAGCATCTGTGAAACCAAATGATTTAAGCAGTTGGAAGGATTACTATGAGTGGAGGTGCTTACCCCTCCATTC GCCGGTTGCTTTGATTCTTCATTGGCCGCTCACTGTATATTACGCTACTCGAATTGCTAATGCGGGAATATCATCTCTCGGGACTAGCAAGCAACTCTGC ATACACTATCTCGGGCCTGAAAAGGAGCTTTCGCAACTTGATGCATTCGGGGAATTGAGCGCACTTTTCCCTGATAGACAGGTGCATGTGGAGCTAATTG GACCTGCCATTCCAGAAACGAGGGATGGTGAGAAGATCGATATCGACAACTATGCCTATTGTCGGGATACAGATTGCTCCTGCAGATCTTCCAGAACGAA CACTGGCAAGTCACCAACTGTTACACTGACTTTACGAAGAGGACTTTACCACGATCGCTATATAGAAATAGCAGAGGATTCAGTTCCTCATATAGTTGTC TCTCCTAATGCTGGCATTGCGGCTTATCCAACTTGGTTACCCACTATTGAGCTTATAAAGGAGATGAACATTCCCGCGGTATTTTCTGATTACTGTGAAG AAGCCTGTCATCTAGCTGCTGGATGCATAACCAGTGTGACGGGTGGTACTATTAGAATTCCCGTGAGTTCGTCTGCACATTACTCGATTTGTGTTAAAGA TCCCCGCTGGACTTTAACTCATACATTTTCCACAATTTTTAGATTCAACTGA
AA sequence Show only first row Show all	>Lus10029210 pacid=23151864 polypeptide=Lus10029210 locus=Lus10029210.g ID=Lus10029210.BGIv1.0 annot-version=v1.0 MPSSAARSRQPAEMECSGKGTRGRCVGPATRRCGSCGAVAYCSVSHQLSHWDYHKLECERLELQMKLVEVLNEFPFTFSDEATLEVFQKQETRCSFFSKR GIHGLGMWRYECGCGESLAVTHSTRFEHQGWDLPGELCPCHGPASVKPNDLSSWKDYYEWRCLPLHSPVALILHWPLTVYYATRIANAGISSLGTSKQLC IHYLGPEKELSQLDAFGELSALFPDRQVHVELIGPAIPETRDGEKIDIDNYAYCRDTDCSCRSSRTNTGKSPTVTLTLRRGLYHDRYIEIAEDSVPHIVV SPNAGIAAYPTWLPTIELIKEMNIPAVFSDYCEEACHLAAGCITSVTGGTIRIPVSSSAHYSICVKDPRWTLTHTFSTIFRFN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70150			zinc ion binding (.1)		Lus10029210 [exp]	0	1
AT3G55460		SCL30, At-SCL30	SC35-like splicing factor 30 (...		Lus10002699 [exp]	4.6	0.7924
AT2G28130			unknown protein		Lus10021421 [exp]	7.6	0.7815
AT1G65440		GTB1	global transcription factor gr...		Lus10013071 [exp]	14.7	0.7663
AT1G61000			unknown protein		Lus10012690 [exp]	21.4	0.7618
AT4G23860			PHD finger protein-related (.1...		Lus10023084 [exp]	24.9	0.7616
AT4G32570	ZIM	TIFY8	TIFY domain protein 8 (.1)		Lus10013138 [exp]	26.3	0.7233
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10037503 [exp]	29.1	0.7534
AT5G11200			DEAD/DEAH box RNA helicase fam...		Lus10002905 [exp]	35.2	0.7446
AT3G55010		EMB2818, ATPURM...	EMBRYO DEFECTIVE 2818, phospho...		Lus10009823 [exp]	35.9	0.7460
AT4G01270			RING/U-box superfamily protein...		Lus10005126 [exp]	38.7	0.7331

Compare expression of checked genes

Lus10029210 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.