Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10470 208 / 7e-67 IBC7, ATRR1, ARR4, MEE7 maternal effect embryo arrest 7, INDUCED BY CYTOKININ 7, RESPONCE REGULATOR 1, response regulator 4 (.1) AT1G59940 206 / 2e-66 ARR3 response regulator 3 (.1) AT3G48100 189 / 1e-60 ATRR2, IBC6, ARR5 INDUCED BY CYTOKININ 6, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, response regulator 5 (.1) AT5G62920 181 / 3e-57 ARR6 response regulator 6 (.1) AT3G57040 174 / 6e-54 ATRR4, ARR9 RESPONSE REGULATOR 4, response regulator 9 (.1) AT1G19050 171 / 5e-53 ARR7 response regulator 7 (.1) AT2G41310 171 / 9e-53 ARR8, ATRR3 RESPONSE REGULATOR 8, response regulator 3 (.1) AT1G74890 166 / 4e-51 ARR15 response regulator 15 (.1) AT3G56380 158 / 7e-49 ARR17 response regulator 17 (.1) AT2G40670 156 / 9e-48 ARR16 response regulator 16 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010723 [exp] 323 / 2e-112 AT1G10470 155 / 1e-46 maternal effect embryo arrest 7, INDUCED BY CYTOKININ 7, RESPONCE REGULATOR 1, response regulator 4 (.1) Lus10030822 [exp] 271 / 3e-91 AT1G59940 201 / 2e-64 response regulator 3 (.1) Lus10030664 [exp] 265 / 1e-88 AT1G10470 206 / 2e-65 maternal effect embryo arrest 7, INDUCED BY CYTOKININ 7, RESPONCE REGULATOR 1, response regulator 4 (.1) Lus10042153 [exp] 197 / 2e-63 AT3G48100 213 / 1e-70 INDUCED BY CYTOKININ 6, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, response regulator 5 (.1) Lus10004243 [exp] 189 / 3e-60 AT3G48100 220 / 2e-73 INDUCED BY CYTOKININ 6, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, response regulator 5 (.1) Lus10016334 [exp] 165 / 2e-50 AT3G57040 211 / 5e-69 RESPONSE REGULATOR 4, response regulator 9 (.1) Lus10002750 [exp] 165 / 3e-50 AT3G57040 212 / 4e-69 RESPONSE REGULATOR 4, response regulator 9 (.1) Lus10039524 [exp] 157 / 2e-47 AT3G57040 222 / 2e-73 RESPONSE REGULATOR 4, response regulator 9 (.1) Lus10036642 [exp] 145 / 5e-43 AT1G19050 160 / 6e-50 response regulator 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G037800 [exp] 209 / 1e-67 AT1G59940 202 / 5e-65 response regulator 3 (.1) Potri.015G070000 [exp] 187 / 5e-59 AT3G48100 231 / 1e-77 INDUCED BY CYTOKININ 6, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, response regulator 5 (.1) Potri.003G197466 [exp] 185 / 1e-58 AT2G41310 232 / 5e-78 RESPONSE REGULATOR 8, response regulator 3 (.1) Potri.T124806 [exp] 184 / 2e-58 AT2G41310 232 / 6e-78 RESPONSE REGULATOR 8, response regulator 3 (.1) Potri.008G193000 [exp] 179 / 7e-56 AT1G59940 198 / 1e-63 response regulator 3 (.1) Potri.006G041100 [exp] 178 / 2e-55 AT3G57040 273 / 4e-93 RESPONSE REGULATOR 4, response regulator 9 (.1) Potri.001G027000 [exp] 173 / 5e-54 AT2G41310 203 / 2e-66 RESPONSE REGULATOR 8, response regulator 3 (.1) Potri.016G038000 [exp] 173 / 9e-54 AT2G41310 242 / 2e-81 RESPONSE REGULATOR 8, response regulator 3 (.1) Potri.019G058900 [exp] 169 / 6e-53 AT3G56380 223 / 5e-76 response regulator 17 (.1) Potri.019G133600 [exp] 151 / 5e-46 AT3G56380 183 / 2e-60 response regulator 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain
Representative CDS sequence Show only first row Show all	>Lus10029211 pacid=23151670 polypeptide=Lus10029211 locus=Lus10029211.g ID=Lus10029211.BGIv1.0 annot-version=v1.0 ATGGCTAGAAACAGCGTCATCGCTACTCACCGGTGGAGCCTGGACGTGGCCGACGCCGGGATCGGCGGTTTCTCCCCGCCGCCTTCTGACGAAGTTCATG TTTTGGCGGTTGATGATAGTCTTATCGATCGGAAAGTCATCGAGCGCTTACTCCGGAATTCAGCCTACAAAGTTACGGTTGTTGACAGCGGAATGAGAGC TCTGCAGTTCCTTGGATTGGATGGTGAAGAGAAGAATCGCTCATCCTTTGGTAACTTTGATAGCTTGAAAATTAAAGTGGATCTGATAATCACCGATTAC TGCATGCCGGAGATGACCGGATACGATTTGCTCAAGAAAATTAAGGGATCGTCCACTTTTAGCGAGATTCCGGTTGTGATAATGTCGTCGGAGAATGTCA TCACTCGAATCGACCGATGTTTAGAGGAAGGAGCAGAGGATTTCATCGTGAAACCAGTGAAAGCGGCAGACGTCGAACGCCTCCGGGGATACATGACCGC AAGAGAGAAGAATCAAGAACACCAGAGAGTCAACAAGAGAAAGCAGCGAGACAGCTGCGACAGCTACTCCGATCTCTCCACCTCCACATCCACAACGACT TCAACGTCCACCTCTCCGTCGTCATCCCCCTCAGTGTCAGTACCGTCGTCGTCCGTCTCATCGCCAGGATCTCCTTCGGATTCTCTGACTAGAAAGCTGA AGATGAGCAGCGGTTCATCGGAGGGGAATGACGAAGGGAAAGAAAGTCTAACGACAGGAGAAAACTGA
AA sequence Show only first row Show all	>Lus10029211 pacid=23151670 polypeptide=Lus10029211 locus=Lus10029211.g ID=Lus10029211.BGIv1.0 annot-version=v1.0 MARNSVIATHRWSLDVADAGIGGFSPPPSDEVHVLAVDDSLIDRKVIERLLRNSAYKVTVVDSGMRALQFLGLDGEEKNRSSFGNFDSLKIKVDLIITDY CMPEMTGYDLLKKIKGSSTFSEIPVVIMSSENVITRIDRCLEEGAEDFIVKPVKAADVERLRGYMTAREKNQEHQRVNKRKQRDSCDSYSDLSTSTSTTT STSTSPSSSPSVSVPSSSVSSPGSPSDSLTRKLKMSSGSSEGNDEGKESLTTGEN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10470		IBC7, ATRR1, AR...	maternal effect embryo arrest ...		Lus10029211 [exp]	0	1
AT1G10470		IBC7, ATRR1, AR...	maternal effect embryo arrest ...		Lus10010723 [exp]	1.0	0.8783
AT5G01820		PKS24, CIPK14, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10025245 [exp]	4.5	0.8773
AT2G44600			unknown protein		Lus10019505 [exp]	6.0	0.8760
AT4G21410		CRK29	cysteine-rich RLK (RECEPTOR-li...		Lus10007635 [exp]	10.2	0.8624
AT3G24040			Core-2/I-branching beta-1,6-N-...		Lus10023687 [exp]	10.5	0.8655
AT3G02700			NC domain-containing protein-r...		Lus10010962 [exp]	15.0	0.8701
AT2G45960		PIP1;2, ATHH2, ...	TRANSMEMBRANE PROTEIN A, NAMED...		Lus10024651 [exp]	15.7	0.8401
AT4G33640			unknown protein		Lus10007087 [exp]	17.0	0.8539
AT4G10840			Tetratricopeptide repeat (TPR)...		Lus10003201 [exp]	22.8	0.8635
AT5G16200			50S ribosomal protein-related ...		Lus10028496 [exp]	25.8	0.8337

Compare expression of checked genes

Lus10029211 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.