Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70140 451 / 4e-152 ATFH8 formin 8 (.1) AT1G59910 402 / 1e-131 Actin-binding FH2 (formin homology 2) family protein (.1) AT1G24150 369 / 1e-120 ATFH4, FH4 formin homologue 4 (.1) AT3G25500 276 / 5e-83 AHF1, AFH1, ATFH1 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) AT5G67470 271 / 4e-82 ATFH6 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) AT3G05470 261 / 2e-78 Actin-binding FH2 (formin homology 2) family protein (.1) AT2G43800 252 / 4e-75 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G54650 252 / 6e-75 ATFH5, Fh5 FORMIN HOMOLOGY 5, formin homology5 (.1.2) AT4G15200 244 / 5e-73 AFH3 formin 3 (.1.2) AT5G48360 192 / 1e-53 Actin-binding FH2 (formin homology 2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010724 [exp] 692 / 0 AT1G70140 442 / 2e-147 formin 8 (.1) Lus10042154 [exp] 367 / 3e-123 AT1G70140 377 / 1e-123 formin 8 (.1) Lus10004244 [exp] 367 / 2e-122 AT1G70140 396 / 6e-130 formin 8 (.1) Lus10004505 [exp] 281 / 3e-86 AT3G05470 628 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10025195 [exp] 280 / 5e-85 AT5G67470 642 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10019298 [exp] 280 / 8e-85 AT5G67470 826 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10011524 [exp] 279 / 2e-84 AT5G67470 818 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10029897 [exp] 267 / 5e-81 AT3G05470 618 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10036609 [exp] 263 / 6e-79 AT5G54650 581 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G037900 [exp] 533 / 0 AT1G70140 488 / 4e-162 formin 8 (.1) Potri.008G192900 [exp] 501 / 2e-171 AT1G70140 499 / 2e-166 formin 8 (.1) Potri.015G069800 [exp] 429 / 2e-143 AT1G70140 484 / 3e-160 formin 8 (.1) Potri.007G054900 [exp] 286 / 2e-87 AT5G67470 684 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Potri.007G140200 [exp] 279 / 2e-84 AT3G25500 654 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.013G017900 [exp] 275 / 3e-83 AT3G05470 648 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.017G009900 [exp] 274 / 8e-83 AT3G25500 631 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.001G416100 [exp] 271 / 9e-82 AT5G54650 623 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.011G131700 [exp] 268 / 2e-80 AT5G54650 590 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.005G026300 [exp] 265 / 2e-79 AT3G05470 652 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02181 [flax] [poplar] FH2 Formin Homology 2 Domain
Representative CDS sequence Show only first row Show all	>Lus10029212 pacid=23151857 polypeptide=Lus10029212 locus=Lus10029212.g ID=Lus10029212.BGIv1.0 annot-version=v1.0 ATGGTGTGGGACAACCCCCCCGGCCGCTCTTTCAGAGTCGACGGCGATCTAATGGAAGCACTGTTCGGAACCGTAGCAACGAACAGGAAATCCCCAAACA GAGAAGAATCAAGTCCGAATTCAACCACCACTCCAAACAACAACTTCACCAGTGCAAGATCCCAGATCGTGATTCTCGACCCGAGAAAGTCGCAGAACAT CGCCATCGTCCTCAAATCGATCGCAATCTCCCGCAAGGAGCTTCTCGAATCGCTCACCGCAGGCCGCGGAATGGACGCCGAGCTCCTCGAGAAGCTGATG AGGATCGCCCCGACGAAAGAGGAAGAAACTCAGATCCTCGACTTCACCGGCGACCCGACCCGACTGGCTGACGCCGAGTCTTTCCTCTACCATCTCCTCC GATCGATTCCTTCGGCCTTCACCCGGGCGAACGCCATGCTGTTTAGAGCAAACTACGCCTCCGAGATCGCTCAGTTCAAGGAGTCTCTGCAAACCCTTGA AATGGGTTGTAAAGAGCTTAGAAACAGAGGACTGTTCGTGAAGCTTCTGGAAGCAATTCTGAAAGCTGGAAATCGGATGAACGCGGGAACTGCGCGAGGA AATGCTCAGGCGTTTAAGCTTAGTTCGCTGACAAAGCTCTCCGATGTTAGGAGCTCCGACGGGAAGACGACCTTGCTCCATTTCGTGGTGGAGGAGGTTG TAAGATCGGAAGGTAAACGCGGAGTTCTGAACCGAAACCGGAGCCTCAGCAGGAATAGTAGCATCAATTCGAATTCGAATTCGAACTCCAAGGACGACAA GGAGAAAGAGTACATTATGCTCGGATTACCGATCGTGGGAGGATTAAGCGCCGAATTCACCAACGTGAAGAAAGCAGCTCAGATCGACTACGACACTTTC GCATCCACTTGCATCTCGATCGCATCTCGAGCTGCCGAGGTGAAGCAGTGTCTGGTCCAATGCGCCGTCAACGGAGAAGGCGGACTTTTTTCGAAGGAGA TGAAAGGCTTTCTAGAGTCGGCCGATAAGGAAATGAGAGTGTTGAGGGAATCACAGAAGGAAGTAATCGAGCTCGTGAAGCGAACGACGGAGTATTATCA TCCCGGAGGTTCGAATTCGAATCCGAATTCAAAAGATCAGGGAGGAGCAGACAGGCCGCTTCAGCTTTTCGTCATAATTCGTGACTTCCTTGGGATGGTC GACAATGTCTGTGTGGAGATAGCTAGGAGTCTACAGAGGAGGAAGAGACCTTCTTCAAGTTCTTCGAATGGATCTTCGTCTCCAAAATCGCCTGCTAAGC TCCCAGTCAGGTTTCCGAACTTGCCGGAGCATTTCCTTAAGGAAAGGAATCCGAGCAGTTCTAGTGAATCGGATGCTGAGTTCTGA
AA sequence Show only first row Show all	>Lus10029212 pacid=23151857 polypeptide=Lus10029212 locus=Lus10029212.g ID=Lus10029212.BGIv1.0 annot-version=v1.0 MVWDNPPGRSFRVDGDLMEALFGTVATNRKSPNREESSPNSTTTPNNNFTSARSQIVILDPRKSQNIAIVLKSIAISRKELLESLTAGRGMDAELLEKLM RIAPTKEEETQILDFTGDPTRLADAESFLYHLLRSIPSAFTRANAMLFRANYASEIAQFKESLQTLEMGCKELRNRGLFVKLLEAILKAGNRMNAGTARG NAQAFKLSSLTKLSDVRSSDGKTTLLHFVVEEVVRSEGKRGVLNRNRSLSRNSSINSNSNSNSKDDKEKEYIMLGLPIVGGLSAEFTNVKKAAQIDYDTF ASTCISIASRAAEVKQCLVQCAVNGEGGLFSKEMKGFLESADKEMRVLRESQKEVIELVKRTTEYYHPGGSNSNPNSKDQGGADRPLQLFVIIRDFLGMV DNVCVEIARSLQRRKRPSSSSSNGSSSPKSPAKLPVRFPNLPEHFLKERNPSSSSESDAEF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70140		ATFH8	formin 8 (.1)		Lus10029212 [exp]	0	1
AT1G24530			Transducin/WD40 repeat-like su...		Lus10006233 [exp]	4.8	0.7452
					Lus10025864 [exp]	10.6	0.6866
AT3G10660		ATCPK2, CPK2	calmodulin-domain protein kina...		Lus10013603 [exp]	15.1	0.7355
AT1G21200	Trihelix		sequence-specific DNA binding ...		Lus10029777 [exp]	16.5	0.7315
AT5G64550			loricrin-related (.1)		Lus10011515 [exp]	18.8	0.7311
AT1G14340			RNA-binding (RRM/RBD/RNP motif...		Lus10012843 [exp]	21.1	0.7385
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10004712 [exp]	22.7	0.7386
AT3G23000		PKS7, ATSRPK1, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10021892 [exp]	26.8	0.6596
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Lus10012089 [exp]	28.2	0.7126
AT5G04020			calmodulin binding (.1)		Lus10035417 [exp]	28.4	0.6419

Compare expression of checked genes

Lus10029212 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.