Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24160 134 / 4e-36 unknown protein AT1G70100 130 / 6e-35 unknown protein AT3G27350 86 / 7e-20 unknown protein AT3G26050 87 / 2e-19 TPX2 (targeting protein for Xklp2) protein family (.1) AT1G70950 83 / 3e-18 TPX2 (targeting protein for Xklp2) protein family (.1) AT5G40700 78 / 4e-17 unknown protein AT1G23060 76 / 6e-16 unknown protein AT3G01710 72 / 2e-14 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010725 [exp] 348 / 3e-118 AT1G70100 213 / 2e-62 unknown protein Lus10037054 [exp] 88 / 1e-19 AT3G26050 132 / 9e-33 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10032115 [exp] 81 / 2e-17 AT3G01710 181 / 4e-52 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10014571 [exp] 79 / 1e-16 AT3G01710 100 / 1e-22 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10002952 [exp] 72 / 1e-14 AT1G24160 77 / 1e-15 unknown protein Lus10003514 [exp] 73 / 2e-14 AT1G24160 76 / 2e-14 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G192800 [exp] 145 / 1e-40 AT1G70100 197 / 6e-57 unknown protein Potri.010G038100 [exp] 144 / 6e-40 AT1G70100 196 / 4e-56 unknown protein Potri.008G180900 [exp] 93 / 2e-21 AT3G26050 119 / 4e-28 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.010G053200 [exp] 89 / 5e-20 AT3G26050 113 / 1e-26 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.001G336300 [exp] 89 / 5e-20 AT3G27350 124 / 1e-31 unknown protein Potri.008G129300 [exp] 87 / 3e-19 AT1G70950 241 / 2e-72 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.010G113000 [exp] 86 / 3e-19 AT1G70950 147 / 5e-38 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.019G075700 [exp] 82 / 7e-18 AT5G40700 74 / 1e-14 unknown protein Potri.013G101300 [exp] 79 / 1e-16 AT1G24160 71 / 7e-13 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029213 pacid=23151761 polypeptide=Lus10029213 locus=Lus10029213.g ID=Lus10029213.BGIv1.0 annot-version=v1.0 ATGGGTGAATCTATAGTTGCTTCCTCCTGGAATGATGGAGAAAAGGCTACAAACCCTAGTCTGGAGGTGTCGGTGTCATTTGGCAGATTTGAGAATGACT CGTTGTCTTGGGAGAAATGGTCTACTTTCTCTCCAAACAAGTATTTGGAGGAGGTTGAGAAGTGTGCCACTCCTGGATCTGTAGCTCAGAAGAAGGCCTA CTTTGAAGCTCATTACAAGAGGATTGCTGCCAGAAAGGCTGAGTTGTTGTTAGATCAGGAAAAACAACAGCAGTCTGATGATCAGAACGCTCAAGATCCG GTATGCTATGATGATTCTGATGTAGGGTTTGAGCCAGTGATGGGAAAAGCAAGTGAGTCTGAGAATGGTGAAGATACTGAACCACCACAATTAGCTTCAG TTAAGGAAGTAGAAGTAGAAGTGGAAGAAGAAGAACTTGTTAATGGAAGTTTTTCAGAAAGTTCCGAGCTTGACAAGGTGGAAGTGGTGGAACCAGCTGT TTCAGTACAAGGATCAGAGATTCTACCAATTGGGTCTCAAGATGAGGAAGAAAGATCAGAAATTCTACCAATTGGATCAGAGAAGGTTGAGGAAGAAGAG AGCTCTGCAGCAATAATTAAAGTAGAGGGGGATGGTAAGTTGGATGTTAAGATGAAAAGTACTTCTGCAACTAAGAAGCCAAAGGCACAGAAGAAACCAT CTCAGAAGGTAAAATTGCTTGTAGTTCTTTCTAGTTTCTAG
AA sequence Show only first row Show all	>Lus10029213 pacid=23151761 polypeptide=Lus10029213 locus=Lus10029213.g ID=Lus10029213.BGIv1.0 annot-version=v1.0 MGESIVASSWNDGEKATNPSLEVSVSFGRFENDSLSWEKWSTFSPNKYLEEVEKCATPGSVAQKKAYFEAHYKRIAARKAELLLDQEKQQQSDDQNAQDP VCYDDSDVGFEPVMGKASESENGEDTEPPQLASVKEVEVEVEEEELVNGSFSESSELDKVEVVEPAVSVQGSEILPIGSQDEEERSEILPIGSEKVEEEE SSAAIIKVEGDGKLDVKMKSTSATKKPKAQKKPSQKVKLLVVLSSF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24160			unknown protein		Lus10029213 [exp]	0	1
AT5G59960			unknown protein		Lus10005446 [exp]	3.5	0.8304
AT4G16730		AtTPS02	terpene synthase 02 (.1)		Lus10033643 [exp]	6.2	0.7699
AT5G58190		ECT10	evolutionarily conserved C-ter...		Lus10027582 [exp]	6.9	0.7866
AT2G28840		XBAT31	XB3 ortholog 1 in Arabidopsis ...		Lus10016561 [exp]	7.1	0.7506
AT1G56220			Dormancy/auxin associated fami...		Lus10031488 [exp]	7.5	0.8053
					Lus10018519 [exp]	8.2	0.7397
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10017209 [exp]	8.2	0.8218
AT1G58110	bZIP		Basic-leucine zipper (bZIP) tr...		Lus10015457 [exp]	10.1	0.7999
					Lus10001325 [exp]	12.3	0.7333
AT3G55270		MKP1, ATMKP1	ARABIDOPSIS MITOGEN-ACTIVATED ...		Lus10003291 [exp]	13.9	0.8150

Compare expression of checked genes

Lus10029213 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.