Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10460 261 / 5e-89 GLP7 germin-like protein 7 (.1) AT4G14630 182 / 2e-57 GLP9 germin-like protein 9 (.1) AT5G38960 178 / 4e-56 RmlC-like cupins superfamily protein (.1) AT3G62020 171 / 3e-53 GLP10 germin-like protein 10 (.1.2) AT5G39160 167 / 6e-52 RmlC-like cupins superfamily protein (.1.2.3) AT5G39190 167 / 8e-52 ATGER2, GLP2A GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) AT5G39130 166 / 1e-51 RmlC-like cupins superfamily protein (.1) AT3G04200 166 / 4e-51 RmlC-like cupins superfamily protein (.1) AT1G02335 164 / 1e-50 GL22 germin-like protein subfamily 2 member 2 precursor (.1) AT3G05950 164 / 2e-50 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010726 [exp] 429 / 7e-155 AT1G10460 262 / 2e-89 germin-like protein 7 (.1) Lus10003114 [exp] 169 / 2e-52 AT5G39150 303 / 2e-105 RmlC-like cupins superfamily protein (.1) Lus10006543 [exp] 169 / 2e-52 AT5G39150 303 / 2e-105 RmlC-like cupins superfamily protein (.1) Lus10000622 [exp] 166 / 5e-51 AT5G39130 307 / 7e-107 RmlC-like cupins superfamily protein (.1) Lus10035278 [exp] 165 / 5e-51 AT3G05950 254 / 3e-86 RmlC-like cupins superfamily protein (.1) Lus10006538 [exp] 164 / 1e-50 AT5G39120 313 / 3e-109 RmlC-like cupins superfamily protein (.1) Lus10030048 [exp] 164 / 1e-50 AT3G05950 249 / 3e-84 RmlC-like cupins superfamily protein (.1) Lus10003116 [exp] 164 / 1e-50 AT5G39150 303 / 2e-105 RmlC-like cupins superfamily protein (.1) Lus10034254 [exp] 164 / 1e-50 AT5G39160 251 / 6e-85 RmlC-like cupins superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G038200 [exp] 291 / 2e-100 AT1G10460 249 / 4e-84 germin-like protein 7 (.1) Potri.019G026200 [exp] 175 / 1e-54 AT3G05950 308 / 2e-107 RmlC-like cupins superfamily protein (.1) Potri.005G001300 [exp] 172 / 9e-54 AT3G62020 309 / 5e-108 germin-like protein 10 (.1.2) Potri.013G051700 [exp] 171 / 2e-53 AT3G05950 298 / 2e-103 RmlC-like cupins superfamily protein (.1) Potri.013G051600 [exp] 171 / 2e-53 AT3G05950 296 / 1e-102 RmlC-like cupins superfamily protein (.1) Potri.019G026400 [exp] 171 / 2e-53 AT3G05950 288 / 2e-99 RmlC-like cupins superfamily protein (.1) Potri.019G026500 [exp] 171 / 2e-53 AT3G05950 288 / 2e-99 RmlC-like cupins superfamily protein (.1) Potri.019G026700 [exp] 171 / 3e-53 AT3G05950 286 / 1e-98 RmlC-like cupins superfamily protein (.1) Potri.019G026000 [exp] 171 / 4e-53 AT3G05950 288 / 3e-99 RmlC-like cupins superfamily protein (.1) Potri.019G025900 [exp] 171 / 4e-53 AT3G05950 288 / 3e-99 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10029214 pacid=23151855 polypeptide=Lus10029214 locus=Lus10029214.g ID=Lus10029214.BGIv1.0 annot-version=v1.0 ATGAAGAAACCCCAATCACTCAATTCATCCTCCTTCATCAAGATCGCCCTCTCAATCTTCACCCTTCTATTGGGCCTAGCCAAGCCCGACCCGGACCCGC TCCAGGACTACTGCGTAGCGGACTCGAAACCTCAGCAGTTCCCATCTGTATTCGTCAACGGAGCTACATGCATCAACCCTAAGCTAGTTGTTGCGTCCCA TTTCGCCACTTCTGCTCTCGGCAAGCCGGGCAACACCCAATCGAACCCTTTCGGGTTCAACGTCACCCTCGCGAATGTTGCCAACTTGCCCGGAATCAAC ACGATGGGCCTCACCATGGGGCGCATCGACATTGGTCCAAACGGGCTCGTCCCACCGCACGCCCACCCACGGGCCTCGGAGGTCACCATTTGTGTCAAGG GTAGCCTTTTGGTGGGCTTCGTGGACACTTCAAACAAAGTGTTCACCCAACAATTGAGGGTTGGTGAGTCGTTTGTTTTTCCAAAGGGCCTGATCCATTA TCTTTACAATATGGACTCCCGTAGCCCAGCCCTAGCGATTTCTGGGCTCAGCAGCCAAAACCCAGGGGCCCAAGTTGCTTCAACGGCCACTTTCATTTCC AAACCTCCGTTGCCCGACGTCGTTTTGGAGAAGGCTTTTCAAATTACTGGCCAAGATGTAATGAAGATCCGCAAGAATCTTGGAGGATAG
AA sequence Show only first row Show all	>Lus10029214 pacid=23151855 polypeptide=Lus10029214 locus=Lus10029214.g ID=Lus10029214.BGIv1.0 annot-version=v1.0 MKKPQSLNSSSFIKIALSIFTLLLGLAKPDPDPLQDYCVADSKPQQFPSVFVNGATCINPKLVVASHFATSALGKPGNTQSNPFGFNVTLANVANLPGIN TMGLTMGRIDIGPNGLVPPHAHPRASEVTICVKGSLLVGFVDTSNKVFTQQLRVGESFVFPKGLIHYLYNMDSRSPALAISGLSSQNPGAQVASTATFIS KPPLPDVVLEKAFQITGQDVMKIRKNLGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10460		GLP7	germin-like protein 7 (.1)		Lus10029214 [exp]	0	1
AT1G10460		GLP7	germin-like protein 7 (.1)		Lus10010726 [exp]	1.0	0.9960
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10013549 [exp]	2.0	0.9890
AT1G20850		XCP2	xylem cysteine peptidase 2 (.1...		Lus10013204 [exp]	2.8	0.9920
AT3G62160			HXXXD-type acyl-transferase fa...		Lus10004527 [exp]	3.5	0.9903
AT2G44260			Plant protein of unknown funct...		Lus10017580 [exp]	5.3	0.9809
AT1G43790		TED6	tracheary element differentiat...		Lus10018925 [exp]	5.5	0.9879
AT1G10800			unknown protein		Lus10041270 [exp]	5.9	0.9868
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Lus10031721 [exp]	6.0	0.9838
AT3G45010		SCPL48	serine carboxypeptidase-like 4...		Lus10041339 [exp]	6.5	0.9878
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10036460 [exp]	6.5	0.9715

Compare expression of checked genes

Lus10029214 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.