Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70090 536 / 0 GATL9, LGT8 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) AT1G24170 527 / 0 GATL8, LGT9 GALACTURONOSYLTRANSFERASE-LIKE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT3G28340 462 / 9e-164 GolS8, GATL10 galactinol synthase 8, galacturonosyltransferase-like 10 (.1) AT3G62660 434 / 1e-152 GATL7 galacturonosyltransferase-like 7 (.1) AT4G02130 431 / 1e-151 GATL6, LGT10 galacturonosyltransferase 6 (.1.2.3) AT1G02720 417 / 6e-146 GATL5 galacturonosyltransferase 5 (.1.2) AT3G06260 397 / 2e-138 GolS9, GATL4 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) AT3G50760 390 / 2e-135 GATL2 galacturonosyltransferase-like 2 (.1) AT1G19300 375 / 9e-130 ATGATL1, GATL1, PARVUS, GLZ1 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT1G13250 367 / 2e-126 GATL3 galacturonosyltransferase-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010727 [exp] 662 / 0 AT1G70090 546 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10013296 [exp] 570 / 0 AT1G70090 534 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10030821 [exp] 564 / 0 AT1G70090 533 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10002440 [exp] 427 / 7e-149 AT3G62660 597 / 0.0 galacturonosyltransferase-like 7 (.1) Lus10032728 [exp] 396 / 1e-137 AT1G19300 515 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10018801 [exp] 395 / 3e-137 AT1G19300 518 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10016301 [exp] 393 / 1e-136 AT1G19300 506 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10012765 [exp] 393 / 1e-136 AT3G06260 519 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Lus10034012 [exp] 388 / 1e-134 AT3G06260 522 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G038300 [exp] 540 / 0 AT1G70090 580 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Potri.008G192600 [exp] 514 / 0 AT1G70090 556 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Potri.014G125000 [exp] 431 / 3e-151 AT3G62660 596 / 0.0 galacturonosyltransferase-like 7 (.1) Potri.002G200200 [exp] 430 / 5e-151 AT3G62660 593 / 0.0 galacturonosyltransferase-like 7 (.1) Potri.014G040300 [exp] 400 / 3e-139 AT1G19300 489 / 1e-174 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.008G018100 [exp] 399 / 6e-139 AT3G06260 533 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Potri.007G031700 [exp] 399 / 8e-139 AT3G50760 459 / 5e-163 galacturonosyltransferase-like 2 (.1) Potri.002G132900 [exp] 399 / 9e-139 AT1G19300 483 / 2e-172 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.005G128000 [exp] 397 / 5e-138 AT3G50760 463 / 9e-165 galacturonosyltransferase-like 2 (.1) Potri.010G129400 [exp] 396 / 5e-138 AT1G13250 521 / 0.0 galacturonosyltransferase-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01501 [flax] [poplar] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Lus10029215 pacid=23151707 polypeptide=Lus10029215 locus=Lus10029215.g ID=Lus10029215.BGIv1.0 annot-version=v1.0 ATGGCAGCCGCCGGAGCAATCCGGTCCGATTTACTGGTCGGTTTATCACTCTTCCTCTTTCTTTCATCTTCCTTCTGCCTCGGGATTCGTTCCATTCCGG ACGGAGTAGATTTCTCCGGTCTGAACCGGTTCAACGAAGCGCCAGAGTACCGTAACGGAGTCGGGTGCCCGACTACCGCCGGCGGGGGGCGGGGCCCCCG CCCAACCGCCGGCGGGTCATCATGCGCCCCGTCGCTGATCCACATCGCCATGACTCTAGACTCGGAGTATCTCCGGGGATCGATCGCCGCGGTCCATTCG GTGTTGAAGCACGCGTCCTGTCCGGAGAACGTCTACTTCCACTTCATAGCGGCGGAGTTCGACCCGACGACGCCGCGGACTCTGAGCCGGTTGGTCCGGT CGACTTTCCCGTCGCTCCGGTTCCAAGTCCACATCTTTAGAGAAGACACCGTCATCAACTTAATCTCTTCCTCAATCCGGCAGGCTCTGGAGAATCCGTT GAACTATGCGAGGAACTATCTCGGCGAGCTGCTCGACGTTTGCGTGAAACGGGTCATCTACCTGGACTCGGATCTGGTGGTGGTCGACGACATTCAGAAG CTGTGGAGCACTGTACTAACCGGGTCGCGGGTCATCGGAGCTCCGGAGTATTGCCACGCGAACTTCACCAAGTATTTTACTCCGGCGCTGTGGTCCGACC CGGTCATGTCCCGGGTTTTCCAGTCTCGAAAGCCTTGCTACTTCAACACAGGGGTGATGGTGATGGATTTGGAGAGGTGGAGGGAAGGGAACTACAGGAA GAAGATCGAGTTGTGGATGGAGATTCAGAGGCAGAGGAGGATATACGATTTGGGATCTCTGCCGCCGTTTTTGCTGGTGTTCGCCGGAAACGTGGAGACG ATTGACCACCGGTGGAACCAGCACGGATTGGGCGGCGACAATGTTAGAGGAAGCTGTAGATCGTTGCATCCGGGACCGGTGAGCTTGCTGCATTGGAGCG GGAAAGGGAAGCCATGGGTTAGACTCGATGAGAAGACTCCCTGCCCGATTGATCACTTGTGGGAGCCGTACGATCTCCATCGGAGCTCCTCTGTTTCAGT GGCCGGAATTTAG
AA sequence Show only first row Show all	>Lus10029215 pacid=23151707 polypeptide=Lus10029215 locus=Lus10029215.g ID=Lus10029215.BGIv1.0 annot-version=v1.0 MAAAGAIRSDLLVGLSLFLFLSSSFCLGIRSIPDGVDFSGLNRFNEAPEYRNGVGCPTTAGGGRGPRPTAGGSSCAPSLIHIAMTLDSEYLRGSIAAVHS VLKHASCPENVYFHFIAAEFDPTTPRTLSRLVRSTFPSLRFQVHIFREDTVINLISSSIRQALENPLNYARNYLGELLDVCVKRVIYLDSDLVVVDDIQK LWSTVLTGSRVIGAPEYCHANFTKYFTPALWSDPVMSRVFQSRKPCYFNTGVMVMDLERWREGNYRKKIELWMEIQRQRRIYDLGSLPPFLLVFAGNVET IDHRWNQHGLGGDNVRGSCRSLHPGPVSLLHWSGKGKPWVRLDEKTPCPIDHLWEPYDLHRSSSVSVAGI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70090		GATL9, LGT8	GALACTURONOSYLTRANSFERASE-LIKE...		Lus10029215 [exp]	0	1
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10022728 [exp]	6.2	0.8443
AT1G70090		GATL9, LGT8	GALACTURONOSYLTRANSFERASE-LIKE...		Lus10010727 [exp]	8.2	0.8645
AT2G25270			unknown protein		Lus10038102 [exp]	10.2	0.8529
AT1G08960		CCX5, AtCXX5, A...	cation calcium exchanger 5, A...		Lus10029938 [exp]	13.0	0.8216
AT5G13640		PDAT1, ATPDAT	PHOSPHOLIPID:DIACYLGLYCEROL AC...		Lus10021564 [exp]	13.5	0.7991
AT4G08950		EXO	EXORDIUM, Phosphate-responsive...		Lus10021370 [exp]	13.9	0.8244
AT2G24290			Protein of unknown function (D...		Lus10036299 [exp]	14.1	0.7831
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10026609 [exp]	14.5	0.8140
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Lus10000046 [exp]	15.1	0.7868
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Lus10023645 [exp]	16.5	0.8306

Compare expression of checked genes

Lus10029215 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.