Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70060 853 / 0 SNL4 SIN3-like 4 (.1) AT1G24190 825 / 0 SNL3, AtSin3 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2) AT1G59890 727 / 0 SNL5 SIN3-like 5 (.1.2.3.4) AT3G01320 705 / 0 SNL1 SIN3-like 1 (.1.2) AT5G15020 699 / 0 SNL2 SIN3-like 2 (.1.2) AT1G10450 405 / 2e-124 SNL6 SIN3-like 6 (.1) AT1G10250 102 / 4e-26 unknown protein AT3G24260 52 / 2e-06 unknown protein AT3G28870 45 / 0.0002 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010729 [exp] 1313 / 0 AT1G70060 1191 / 0.0 SIN3-like 4 (.1) Lus10013293 [exp] 1217 / 0 AT1G70060 1454 / 0.0 SIN3-like 4 (.1) Lus10030817 [exp] 1217 / 0 AT1G70060 1426 / 0.0 SIN3-like 4 (.1) Lus10032181 [exp] 731 / 0 AT5G15020 1362 / 0.0 SIN3-like 2 (.1.2) Lus10014504 [exp] 407 / 3e-128 AT3G01320 897 / 0.0 SIN3-like 1 (.1.2) Lus10014505 [exp] 274 / 1e-81 AT5G15020 449 / 2e-144 SIN3-like 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G192200 [exp] 1137 / 0 AT1G24190 1330 / 0.0 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2) Potri.010G038700 [exp] 1092 / 0 AT1G70060 1396 / 0.0 SIN3-like 4 (.1) Potri.001G350200 [exp] 765 / 0 AT5G15020 1391 / 0.0 SIN3-like 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08295 [flax] [poplar] Sin3_corepress Sin3 family co-repressor
Representative CDS sequence Show only first row Show all	>Lus10029217 pacid=23151835 polypeptide=Lus10029217 locus=Lus10029217.g ID=Lus10029217.BGIv1.0 annot-version=v1.0 ATGCTAGAGTTCTTGCTAACTGTTTTGCCCGCAATCCTTTTTCAAGGTAATTTTCTCAGACCTACTAAAGCAGAAGACAGGCATAGAGAACGTGTGAGGG TCGATGGGGCTAAAGAAAGGGATAGAGAAGCGGGAGAAAGAGATGGACTTGACAGAAATGTAGCCTTTGGCAATAAAGACTCAGGAAGTCATAAGATGTC CTCGTCTTCCAGCAAGGATAAGTTTCTGTGGAAACCTGTCAGCGAACTTGACCTATCCAACTGTGATAGCTGCAGTCCAAGCTATAGGCTTCTTCCGAAG AATTATCCCATTCCCATTGCAAGCGGAAAGACAAGGATTGGGGGTCAAGTTCTGAATGACCATTGGGTTTCCGTCACTTCGGGAAGTGAAGATTACTCTT TTAAGCACATGCGTAAGAACCAGTACGAAGAAAGCCTATTCCGATGCGAAGATGACAGGTTGGAACCTCCTTCCAGTTTATGTTACAATCTCTTCCCACT GCCTATGTATATGGATGTTGGATTTGATGATTTCCAGTTTGAGCTAGATATGTTGTTGGAATCTGTAAATGTAACTACCAAGCGTGTGGAAGAATTATTG GATAAAATAAACAACACCACAACCAAATTGGAGGATCCTATTCGGGTTGAGGACCACCTAACAGCTATAAATCTGAGGTGCATTGAGCGTTTATATGGGG ATCATGGGCTGGATGTGATGGACGTGCTAAGGAAGAACATGTCTCTTGCTTTGCCTGTGATATTGACTCGCTTGAAGCAGAAACAGGAAGAATGGGCAAG GTGCCGTGCAGATTTTAACAAAGTTTGGGCTGAAATCTATGCCAAAAACTATCACAAATCGCTAGATCATCGTAGCTTCTACTTCAAGCAGCAGGATACA AAGAGCTTGAGCACCAAAGCTCTATTGGCAGAAATAAAAGAAATTAGCGAGAAGAAGCACAAAGAAGATGATATGCTTTTAGCCTTTGCTGCTGGAAACA GACGCCCAGTTATACCTAATTTGGAATTTGAGTATCCTGATCCTGATGTCCATGAGGATTTGTATCAGCTAATCAAGTACTCTTGTGGGGAAGTTTGTAC AACTGAGCAGTTGGATAAGGTCATGATGATTTGGACAGGGTTCTTAGAACCAATGTTCGGTGTTGCTTCTCGTCACGGTTCAGAGGACACTGAAGATGTT GTCATGGAAACGACTGATATTTCCAAGCATGGAGACAGCGATGGAAGCCTTAACGACGGTGCCACTACTGACAACTCTAAACACATAAATCCTTCTAGAA ACACGGAAGATATAACCCAAACTGAGCAGTCGAGTTCAACCAGGGTCTGGCTGGATAATGGAATGAAAGAAAATGGTTCTCCTGCCACTGATCGTATTTC TCTTAAAGCCAATTCCTCTTGCAATTCCCTTCAACATGATAAGCTACAGACTGGTGCAGCTGCAGCTGGTAGAACTTCTGGGGACAGTGAGCTAGCTAAT TCCAATGAACGGTTGGCGAATTCCATGGTGTCTCTTGCTACTGGGGCAGAGTTGAGTAACGGAAAACTAAATCCCGAATCAGTTCCTGGCACTGCTTCAT CTAGGCCAAGTAAGGGCACGATTGATGGTGAGGTTGCAGTAGGATCCAGTAAAGAAGTTGTGCTTTCAAAAGAGACTGGTGAAGTTACACCCACGAATGA GGTTGTCGCTGAGGATCGTAAAGCAGAACCAGATACAGAAGTTAAAACTGAAAGAGAAGAAGGCGAGTTGTCCCCCAACGGAGATTTTGAGAAGGATAAT TTTGAAGTTTATGAAGAATCTGGTTCAGAGGCTACGAACAAAGTGAAAGAGACTGCTCCAAGGAGTCCTTTGCAGGGACAAAATGTGGAAGACAAAACAT GTGGAGAGGTAGCAGGGGAAAACGATGCTGAAGTTGACGATGAAGGCGAAGAAAGTGCTCGTGCTCAAAAGTCATCAGATGACAGTGATAACGCCTCTGA AAATGCCGATGTTTCTGGAAGTGATTCAGGTGAAGAATCTTTTGGGGAAGAGCATGAAGGTAATGGGGATCATGATGAGAATGAGAACAAGGCTGAGAGC GAAGGCGAGGCTGAAGGAATAGCTGATGCCCATGACACTAAGGGAGATGGGACAGAACGATTTCTACGCAATATGAAACCTTTAGCAAAGCATGTCCCAC TGGCATTACGTGACCTAGGCAAGGGTTCACGAGTTTTCTATGGAAATGATTCCTTCTATGTGCTTTTCAGGCTTCACCAAACTTTGTACGAAAGAATACA ATCAGCAAAGATCAACTCATCATCCGAGGACAGGAAATGGAGAGCTTCAAATAATACAAGTTCTTCTACCGATCTGTATGCTAGGTTTATGAGTGCACTT TACAATCTACTCGATGGATCTTCCGATAACACAAAATTTGAGGATGACTGCCGGGCTATAATTGGGACACAGTCTTATATTTTATTTACTTTGGATAAGC TAATATATAAGTTGGTCAAACAGCTTCAAACAATGACAGCCGATGAGACGGACACCAAGCTACTTCATTTATATGCTTATGAAAAATCTAGAAAAGTCGG GAGATTTGTTGATGTTGTGTATCATGAAAACGCCCATATCCTCCTCCACGACGAGAATATATATCGAATTGAATGTTCTTCCAGTCCAAACCGGTTGTCC CTACAACTTATGGACTTTGTACACGAGAAGCCTGAGGTCACTTCTGTCGTGATGGACCCAAATTTCATTACGTACCTCCACAGTGATTTCCTCTCCATTG TTCCAGAGGAAAAAGAGAAGCCCGGGGTTTTCATGAAGAGGAACAAACGCCCCAATGCTGTTGATGATGAACTCCAAGCCATGGATGGGGATCAAAATTA G
AA sequence Show only first row Show all	>Lus10029217 pacid=23151835 polypeptide=Lus10029217 locus=Lus10029217.g ID=Lus10029217.BGIv1.0 annot-version=v1.0 MLEFLLTVLPAILFQGNFLRPTKAEDRHRERVRVDGAKERDREAGERDGLDRNVAFGNKDSGSHKMSSSSSKDKFLWKPVSELDLSNCDSCSPSYRLLPK NYPIPIASGKTRIGGQVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRLEPPSSLCYNLFPLPMYMDVGFDDFQFELDMLLESVNVTTKRVEELL DKINNTTTKLEDPIRVEDHLTAINLRCIERLYGDHGLDVMDVLRKNMSLALPVILTRLKQKQEEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDT KSLSTKALLAEIKEISEKKHKEDDMLLAFAAGNRRPVIPNLEFEYPDPDVHEDLYQLIKYSCGEVCTTEQLDKVMMIWTGFLEPMFGVASRHGSEDTEDV VMETTDISKHGDSDGSLNDGATTDNSKHINPSRNTEDITQTEQSSSTRVWLDNGMKENGSPATDRISLKANSSCNSLQHDKLQTGAAAAGRTSGDSELAN SNERLANSMVSLATGAELSNGKLNPESVPGTASSRPSKGTIDGEVAVGSSKEVVLSKETGEVTPTNEVVAEDRKAEPDTEVKTEREEGELSPNGDFEKDN FEVYEESGSEATNKVKETAPRSPLQGQNVEDKTCGEVAGENDAEVDDEGEESARAQKSSDDSDNASENADVSGSDSGEESFGEEHEGNGDHDENENKAES EGEAEGIADAHDTKGDGTERFLRNMKPLAKHVPLALRDLGKGSRVFYGNDSFYVLFRLHQTLYERIQSAKINSSSEDRKWRASNNTSSSTDLYARFMSAL YNLLDGSSDNTKFEDDCRAIIGTQSYILFTLDKLIYKLVKQLQTMTADETDTKLLHLYAYEKSRKVGRFVDVVYHENAHILLHDENIYRIECSSSPNRLS LQLMDFVHEKPEVTSVVMDPNFITYLHSDFLSIVPEEKEKPGVFMKRNKRPNAVDDELQAMDGDQN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10029217 [exp]	0	1
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10010729 [exp]	2.2	0.9518
AT1G30010			Intron maturase, type II famil...		Lus10042828 [exp]	5.3	0.9043
AT4G13970			zinc ion binding (.1)		Lus10003970 [exp]	5.7	0.9137
AT5G04560		DME1, DME	DEMETER, HhH-GPD base excision...		Lus10014367 [exp]	5.7	0.9178
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Lus10031984 [exp]	9.2	0.8917
AT1G08420		BSL2	BRI1 suppressor 1 (BSU1)-like ...		Lus10008369 [exp]	9.6	0.9142
AT4G15840			BTB/POZ domain-containing prot...		Lus10037522 [exp]	10.1	0.9049
AT3G05040		HST1, HST	HASTY 1, HASTY, ARM repeat sup...		Lus10018994 [exp]	15.9	0.8823
AT5G04560		DME1, DME	DEMETER, HhH-GPD base excision...		Lus10023864 [exp]	16.0	0.9130
AT1G55540		EMB1011	Nuclear pore complex protein (...		Lus10021859 [exp]	16.6	0.9025

Compare expression of checked genes

Lus10029217 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.