Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24190 251 / 2e-74 SNL3, AtSin3 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2) AT3G01320 223 / 9e-65 SNL1 SIN3-like 1 (.1.2) AT1G70060 222 / 2e-64 SNL4 SIN3-like 4 (.1) AT5G15020 202 / 1e-57 SNL2 SIN3-like 2 (.1.2) AT1G59890 187 / 3e-52 SNL5 SIN3-like 5 (.1.2.3.4) AT1G24200 171 / 5e-52 Paired amphipathic helix (PAH2) superfamily protein (.1) AT1G10450 176 / 2e-48 SNL6 SIN3-like 6 (.1) AT1G70030 145 / 2e-42 Paired amphipathic helix (PAH2) superfamily protein (.1) AT5G35610 112 / 1e-29 Paired amphipathic helix (PAH2) superfamily protein (.1) AT1G27280 110 / 3e-28 Paired amphipathic helix (PAH2) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010729 [exp] 463 / 2e-153 AT1G70060 1191 / 0.0 SIN3-like 4 (.1) Lus10030817 [exp] 345 / 2e-107 AT1G70060 1426 / 0.0 SIN3-like 4 (.1) Lus10013293 [exp] 343 / 2e-107 AT1G70060 1454 / 0.0 SIN3-like 4 (.1) Lus10032181 [exp] 217 / 1e-62 AT5G15020 1362 / 0.0 SIN3-like 2 (.1.2) Lus10014504 [exp] 200 / 2e-57 AT3G01320 897 / 0.0 SIN3-like 1 (.1.2) Lus10030814 [exp] 121 / 8e-33 AT1G70060 130 / 2e-35 SIN3-like 4 (.1) Lus10030816 [exp] 118 / 9e-32 AT1G59890 140 / 8e-39 SIN3-like 5 (.1.2.3.4) Lus10034645 [exp] 90 / 2e-21 AT1G24190 107 / 1e-27 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2) Lus10042336 [exp] 67 / 6e-14 AT1G24190 87 / 8e-22 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G192200 [exp] 342 / 9e-107 AT1G24190 1330 / 0.0 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2) Potri.010G038700 [exp] 333 / 2e-103 AT1G70060 1396 / 0.0 SIN3-like 4 (.1) Potri.001G350200 [exp] 205 / 1e-58 AT5G15020 1391 / 0.0 SIN3-like 2 (.1.2) Potri.001G316300 [exp] 57 / 2e-09 AT3G01320 86 / 1e-19 SIN3-like 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02671 [flax] [poplar] PAH Paired amphipathic helix repeat
Representative CDS sequence Show only first row Show all	>Lus10029218 pacid=23151665 polypeptide=Lus10029218 locus=Lus10029218.g ID=Lus10029218.BGIv1.0 annot-version=v1.0 ATGAGCTGCAATCGCAGCATAAAAGGCCAATGGTGTCTTCTAGAGGAGAAACGTACTGAATTCTATCTCTTCCTCTGTTGTTTTGATGCTTTTCGTTCTG GACAGCCACAAATGGTGGGAGGAGGAGCAGCAATAGGAGGAGCTACTGCCCAAAAGCTTACTACAAATGATGCATTGGCTTATCTGAAGGCTGTGAGGGA AATATTCGAGGATAAACGGGAAAAATATGATGAGTTTCTTGAGGTTATGAAAGATTTCAAAGCTCAAAGAATTGATACTGCAGGTGTCATAGCAAGGGTG AAGGACCTCTTTAAAGGACATCGTAACCTGATTTTGGGTTTTAATACCTTCTTGCCGAAGGGATATGAGATCACTCTACCTCTGGAGGATGAACAAGCTC CACGGACCAAACCGGTTGAATTTGAAGAAGCTATTACTTTTGTCAACAAAATTAAGACTAGGTTCGAAGGTGATGATCACGTTTACAAAGCATTTTTAGA TATTTTGAACATGTACAGGAAGGAAAATAAACCCATCAGAGAGGTCTATCAGGAGAAAGAACGGAATCATCCTGATCGCGATTTCAGTGCTAATCGTCCT GATCTTGACCAAGATAGAGCTCGTATGAGAGCAGATAAAGAGCAAAGGATGCAAGTTGAAAAAGAAAAAGAGAGAAGGGAAGATAGAGATAGGCGAGGAC ATGATGATAGAGACTACGAAAATGATGCAAATAATGACCATAGCATGCAACGGTTTCCTCATAGTAGGAAACCTGGTCGTAAGTTTCAAGATTCTGATCC GGATCAAGTTGGCGAAGGTGATGATAACTACGGAATGCATCCCAGTTCATCCACTTATGATGCTAAGAGTGCTGTTAAAAGTGCTTTAAGCCAAGAGCTT GCTTTCTGTGAGAAAGTGAAGGAGAAGTTGCGTCCTGATAATTACCAAGAATTTTTGAGGGCCTACTCTGTAATCAACAGTGACTGCAGTATCGATGAGT TAATGTACCGAATTGAAGAGATCTTACAGTTACTTCTGTTACTTCAATTGAATCATGTTTCTCAAGAACAGGACAGTGACATGGAAATTCTTCTTATGTC AGGTTGA
AA sequence Show only first row Show all	>Lus10029218 pacid=23151665 polypeptide=Lus10029218 locus=Lus10029218.g ID=Lus10029218.BGIv1.0 annot-version=v1.0 MSCNRSIKGQWCLLEEKRTEFYLFLCCFDAFRSGQPQMVGGGAAIGGATAQKLTTNDALAYLKAVREIFEDKREKYDEFLEVMKDFKAQRIDTAGVIARV KDLFKGHRNLILGFNTFLPKGYEITLPLEDEQAPRTKPVEFEEAITFVNKIKTRFEGDDHVYKAFLDILNMYRKENKPIREVYQEKERNHPDRDFSANRP DLDQDRARMRADKEQRMQVEKEKERREDRDRRGHDDRDYENDANNDHSMQRFPHSRKPGRKFQDSDPDQVGEGDDNYGMHPSSSTYDAKSAVKSALSQEL AFCEKVKEKLRPDNYQEFLRAYSVINSDCSIDELMYRIEEILQLLLLLQLNHVSQEQDSDMEILLMSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24190		SNL3, AtSin3	ARABIDOPSIS THALIANA SIN3 HOMO...		Lus10029218 [exp]	0	1
AT1G02080			transcription regulators (.1.2...		Lus10042877 [exp]	3.9	0.9735
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Lus10014157 [exp]	4.0	0.9680
AT3G54280		RGD3, ATBTAF1, ...	ROOT GROWTH DEFECTIVE 3, DNA b...		Lus10013625 [exp]	4.5	0.9686
AT1G77800			PHD finger family protein (.1....		Lus10024777 [exp]	6.7	0.9661
AT5G24740			Protein of unknown function (D...		Lus10003835 [exp]	7.5	0.9683
AT5G04560		DME1, DME	DEMETER, HhH-GPD base excision...		Lus10014367 [exp]	9.2	0.9377
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10001859 [exp]	9.2	0.9655
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Lus10007174 [exp]	10.8	0.9548
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10010729 [exp]	11.7	0.9502
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Lus10020233 [exp]	12.0	0.9502

Compare expression of checked genes

Lus10029218 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.