Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42610 233 / 8e-79 LSH10 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) AT4G18610 214 / 4e-71 LSH9 LIGHT SENSITIVE HYPOCOTYLS 9, Protein of unknown function (DUF640) (.1) AT1G78815 208 / 1e-68 LSH7 LIGHT SENSITIVE HYPOCOTYLS 7, Protein of unknown function (DUF640) (.1) AT1G07090 207 / 4e-68 LSH6 LIGHT SENSITIVE HYPOCOTYLS 6, Protein of unknown function (DUF640) (.1) AT5G58500 202 / 1e-66 LSH5 LIGHT SENSITIVE HYPOCOTYLS 5, Protein of unknown function (DUF640) (.1) AT3G23290 192 / 1e-62 LSH4 LIGHT SENSITIVE HYPOCOTYLS 4, Protein of unknown function (DUF640) (.2) AT2G31160 190 / 2e-61 OBO1, LSH3 ORGAN BOUNDARY 1, LIGHT SENSITIVE HYPOCOTYLS 3, Protein of unknown function (DUF640) (.1) AT1G16910 187 / 6e-61 LSH8 LIGHT SENSITIVE HYPOCOTYLS 8, Protein of unknown function (DUF640) (.1) AT3G04510 182 / 2e-58 LSH2 LIGHT SENSITIVE HYPOCOTYLS 2, Protein of unknown function (DUF640) (.1) AT5G28490 180 / 1e-57 OBO2, LSH1 ORGAN BOUNDARY 2, LIGHT-DEPENDENT SHORT HYPOCOTYLS 1, Protein of unknown function (DUF640) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007272 [exp] 328 / 6e-116 AT2G42610 241 / 4e-82 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) Lus10029838 [exp] 234 / 8e-79 AT2G42610 261 / 3e-90 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) Lus10020700 [exp] 229 / 6e-77 AT2G42610 258 / 1e-88 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) Lus10042565 [exp] 201 / 5e-66 AT5G28490 233 / 1e-78 ORGAN BOUNDARY 2, LIGHT-DEPENDENT SHORT HYPOCOTYLS 1, Protein of unknown function (DUF640) (.1) Lus10022023 [exp] 201 / 6e-66 AT1G07090 226 / 3e-76 LIGHT SENSITIVE HYPOCOTYLS 6, Protein of unknown function (DUF640) (.1) Lus10023383 [exp] 184 / 3e-59 AT1G07090 246 / 2e-83 LIGHT SENSITIVE HYPOCOTYLS 6, Protein of unknown function (DUF640) (.1) Lus10024901 [exp] 184 / 1e-58 AT2G31160 249 / 3e-84 ORGAN BOUNDARY 1, LIGHT SENSITIVE HYPOCOTYLS 3, Protein of unknown function (DUF640) (.1) Lus10038424 [exp] 183 / 1e-58 AT1G07090 247 / 9e-84 LIGHT SENSITIVE HYPOCOTYLS 6, Protein of unknown function (DUF640) (.1) Lus10022918 [exp] 184 / 2e-58 AT2G31160 249 / 4e-84 ORGAN BOUNDARY 1, LIGHT SENSITIVE HYPOCOTYLS 3, Protein of unknown function (DUF640) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G057300 [exp] 244 / 3e-83 AT2G42610 241 / 2e-82 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) Potri.011G066400 [exp] 240 / 2e-81 AT2G42610 238 / 5e-81 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) Potri.014G142400 [exp] 233 / 1e-78 AT2G42610 259 / 1e-89 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) Potri.001G390900 [exp] 230 / 1e-77 AT1G78815 242 / 2e-82 LIGHT SENSITIVE HYPOCOTYLS 7, Protein of unknown function (DUF640) (.1) Potri.011G109900 [exp] 229 / 4e-77 AT2G42610 238 / 3e-81 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) Potri.002G214200 [exp] 226 / 2e-76 AT2G42610 240 / 5e-82 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) Potri.009G076100 [exp] 216 / 3e-71 AT1G07090 259 / 2e-88 LIGHT SENSITIVE HYPOCOTYLS 6, Protein of unknown function (DUF640) (.1) Potri.001G281000 [exp] 210 / 6e-69 AT1G07090 251 / 4e-85 LIGHT SENSITIVE HYPOCOTYLS 6, Protein of unknown function (DUF640) (.1) Potri.009G157600 [exp] 196 / 4e-64 AT5G28490 228 / 7e-77 ORGAN BOUNDARY 2, LIGHT-DEPENDENT SHORT HYPOCOTYLS 1, Protein of unknown function (DUF640) (.1) Potri.010G070700 [exp] 191 / 1e-61 AT2G31160 226 / 3e-75 ORGAN BOUNDARY 1, LIGHT SENSITIVE HYPOCOTYLS 3, Protein of unknown function (DUF640) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04852 [flax] [poplar] DUF640 Protein of unknown function (DUF640)
Representative CDS sequence Show only first row Show all	>Lus10029219 pacid=23139862 polypeptide=Lus10029219 locus=Lus10029219.g ID=Lus10029219.BGIv1.0 annot-version=v1.0 ATGTCATCATCGGAGCAAAATTTAACGACAACAGTAGATGGATCCTCCTCCACTTCCCGAACCAACCACCACCACCACAACCATCCACCGCCGCTAAGCC GGTACGAGTCGCAGAAGAAACGGGACTGGAACACGTTCGGGCAGTACTTGAAGAACCAGAGGCCGCCCGTTTCGATTTCCCAGTGCGGGTCGGCCCACGT GCTGGACTTCCTCCGATACTTGGACCAATTCGGGAAGACCAAAGTCCACCTGAACGGTTGTGACTTTTTCGGGCAGCCGGACCCGCCTGCCCCGTGCACC TGCCCTCTCAGGCAAGCGTGGGGCAGCCTTGACGCACTGATAGGTAGGCTGAGGGCTGCCTATGAGGAGCACGGCGGGTCCCCTGAGACCAATCCGTTTG GGAACGGGGCGATCCGGGTTTACCTGAGGGAAGTGAGGGAGTGCCAGGCAAAGGCTAGAGGGATCCCGTACAAGAAAAAGAAGAAGAAGAAGGTCATTGG CCATCATAACAAGGTGGCGGCCGTTGGTAGGGATAATTGTCGTCTTGATGGCGGCGGTGGTGGTAATAAGTCGGCGGCGGCGGCTGCTGCTGCTCCTATG CCGCAGTGA
AA sequence Show only first row Show all	>Lus10029219 pacid=23139862 polypeptide=Lus10029219 locus=Lus10029219.g ID=Lus10029219.BGIv1.0 annot-version=v1.0 MSSSEQNLTTTVDGSSSTSRTNHHHHNHPPPLSRYESQKKRDWNTFGQYLKNQRPPVSISQCGSAHVLDFLRYLDQFGKTKVHLNGCDFFGQPDPPAPCT CPLRQAWGSLDALIGRLRAAYEEHGGSPETNPFGNGAIRVYLREVRECQAKARGIPYKKKKKKKVIGHHNKVAAVGRDNCRLDGGGGGNKSAAAAAAAPM PQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42610		LSH10	LIGHT SENSITIVE HYPOCOTYLS 10,...		Lus10029219 [exp]	0	1
AT3G11780			MD-2-related lipid recognition...		Lus10013366 [exp]	2.8	0.9066
					Lus10035642 [exp]	4.6	0.9052
AT4G14600			Target SNARE coiled-coil domai...		Lus10008723 [exp]	4.6	0.8902
AT1G12440			A20/AN1-like zinc finger famil...		Lus10028903 [exp]	5.1	0.9117
AT2G27490		ATCOAE	dephospho-CoA kinase family (....		Lus10002109 [exp]	5.9	0.8932
AT5G09620			Octicosapeptide/Phox/Bem1p fam...		Lus10035641 [exp]	9.5	0.8857
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Lus10025220 [exp]	9.8	0.8976
AT4G16210		ECHIA, E-COAH-2	ENOYL-COA HYDRATASE 2, enoyl-C...		Lus10016920 [exp]	16.6	0.8908
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10005992 [exp]	16.9	0.8740
					Lus10008052 [exp]	17.7	0.8799

Compare expression of checked genes

Lus10029219 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.