Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29260 529 / 0 PEX7, ATPEX7 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) AT3G49660 89 / 1e-19 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G35050 90 / 3e-19 NFC3, MSI3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) AT5G58230 86 / 3e-18 MSI1, MEE70, ATMSI1 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) AT2G16780 80 / 5e-16 MSI02, NFC2, NFC02, MSI2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) AT4G18900 79 / 1e-15 Transducin/WD40 repeat-like superfamily protein (.1) AT1G52360 77 / 7e-15 Coatomer, beta' subunit (.1.2) AT3G15980 77 / 9e-15 Coatomer, beta' subunit (.1.2.3.4.5) AT5G25150 77 / 9e-15 TAF5 TBP-associated factor 5 (.1) AT1G61210 76 / 2e-14 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007274 [exp] 667 / 0 AT1G29260 529 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Lus10039636 [exp] 94 / 5e-21 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10005074 [exp] 89 / 6e-19 AT4G35050 590 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10033459 [exp] 86 / 4e-18 AT5G58230 723 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10027848 [exp] 86 / 6e-18 AT4G35050 585 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10033460 [exp] 84 / 2e-17 AT5G58230 781 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10020916 [exp] 84 / 2e-17 AT5G58230 782 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10020917 [exp] 84 / 2e-17 AT5G58230 696 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 84 / 2e-17 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G057600 [exp] 582 / 0 AT1G29260 556 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Potri.011G066600 [exp] 385 / 9e-135 AT1G29260 379 / 3e-134 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Potri.005G148500 [exp] 95 / 2e-21 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G175300 [exp] 91 / 1e-19 AT2G16780 593 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.009G135100 [exp] 89 / 6e-19 AT2G16780 612 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.014G179700 [exp] 87 / 2e-18 AT5G58230 790 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G216200 [exp] 86 / 6e-18 AT5G58230 784 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G263400 [exp] 86 / 1e-17 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.007G009500 [exp] 84 / 1e-17 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.018G020200 [exp] 84 / 3e-17 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10029221 pacid=23139850 polypeptide=Lus10029221 locus=Lus10029221.g ID=Lus10029221.BGIv1.0 annot-version=v1.0 ATGTATTTGAAAAAGGCACATTTGAGAGGAAATGTGAGGTCAGAGGAAAAGTGTTTTCGTAAATTCCTTTACCGAATCTACCGGCCGAAATCTGTGGGAC AGCGTCCCTTATTTGACAAGACAATCGTGGAAGCCCAACTAGTACCCGTCTTAATCCAAGGCCCATGTTCATTTTCCTGGCCCGTAAACATTCATCATTG GCCCAACAGCCACAAACTCATTTTCAGTTTCTCGTTATCCAACTTTTCATCGAGTACAGTGAAGCTTGCCATTTCAGAGCTGCGGCAGCTCAGACTCGGA GCTTCACCCACCGCAAACTCCCCAATTCGCCACCAAAAAAAATCCCTAACGATGAACCACTTCAAATCGCAATTTAACGGCTACTCCGTCAAATTCAGCC CGTTTTACGAGGACCGCCTAGCCGTCGCCACAGCACAGAACTTCGGCATCCTCGGAAACGGCCGCGTCCACGTCCTCACCGTCCCTCCAACCCCCGCAGC TCCGATGGGCGAGATTGCTTCCTTCGACACTGCCGATGGAGTCTACGACCTCGCCTGGTCTGAATCGCACGATTCCCTCCTTGTCGCAGCAGTCGCAGAC GGCTCTGTCAAGCTCTTCGATACCAACCTCCCCCCGCCGCAGAATCCGCTCCGATCGTTTCAGGAGCACACCCGCGAGGTCCACTCCGTGGACTACAACC CGACCCGGCGCGACTCCTTCATCACCGCGTCGTGGGACGATACGGTAAAGCTCTGGACTTTAGATCGTTCCGCTAGCGTAAGAACGTTTAAAGAACACGC CTACTGCGTGTATTCCGCCGCCTGGAATCCGAGGCATACCGATGTCTTTGCCTCAGCTTCTGGTGATTGTACCGTTAGGGTTTGGGATGTTCGTGAGCCC GGGTCGACGATGATAATCCCGGGGCATGATTTCGAGATACTCTCGTGTGATTGGAACAAGTATGATGAGTGTTTGATTGCTACTTCGTCGGTGGATAAGA GCATTAGGGTGTGGGATGTGAGGAATTACAGAATGCCGATTACTACTTTGAATGGTCATAGCTATGCCGTCAGAAAGGTGAAATTTTCACCTCACCATAG GAATTTGATGGTGTCTTGCTCGTATGATATGACGGTTTGTATGTGGGATTTCATGGTGGATGATTCCCTTGTTGGGAGGTATGAACACCACACTGAGTTT GCTGTTGGTGTCGATTTGAGTGTGCTTGTCGAAGGAATGGTCGCCAGTACCGGATGGGACGAGATGGTTTTCGTCTGGCAGCATGGAGCTGGCGGCCCTC CTAGAGGTCCTTGA
AA sequence Show only first row Show all	>Lus10029221 pacid=23139850 polypeptide=Lus10029221 locus=Lus10029221.g ID=Lus10029221.BGIv1.0 annot-version=v1.0 MYLKKAHLRGNVRSEEKCFRKFLYRIYRPKSVGQRPLFDKTIVEAQLVPVLIQGPCSFSWPVNIHHWPNSHKLIFSFSLSNFSSSTVKLAISELRQLRLG ASPTANSPIRHQKKSLTMNHFKSQFNGYSVKFSPFYEDRLAVATAQNFGILGNGRVHVLTVPPTPAAPMGEIASFDTADGVYDLAWSESHDSLLVAAVAD GSVKLFDTNLPPPQNPLRSFQEHTREVHSVDYNPTRRDSFITASWDDTVKLWTLDRSASVRTFKEHAYCVYSAAWNPRHTDVFASASGDCTVRVWDVREP GSTMIIPGHDFEILSCDWNKYDECLIATSSVDKSIRVWDVRNYRMPITTLNGHSYAVRKVKFSPHHRNLMVSCSYDMTVCMWDFMVDDSLVGRYEHHTEF AVGVDLSVLVEGMVASTGWDEMVFVWQHGAGGPPRGP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29260		PEX7, ATPEX7	ARABIDOPSIS PEROXIN 7, peroxin...		Lus10029221 [exp]	0	1
AT2G42005			Transmembrane amino acid trans...		Lus10022995 [exp]	1.7	0.9144
AT2G37110			PLAC8 family protein (.1)		Lus10026492 [exp]	2.8	0.9083
AT5G65720		ATNIFS1, NIFS1 ...	NITROGEN FIXATION S HOMOLOG 1,...		Lus10011590 [exp]	3.5	0.8877
AT5G11770			NADH-ubiquinone oxidoreductase...		Lus10032157 [exp]	5.2	0.8952
AT2G40940		ERS1	ethylene response sensor 1 (.1...		Lus10013415 [exp]	6.6	0.8648
AT4G09670			Oxidoreductase family protein ...		Lus10013633 [exp]	7.4	0.8861
AT2G42005			Transmembrane amino acid trans...		Lus10001390 [exp]	8.1	0.8770
AT1G05780			Vacuolar ATPase assembly integ...		Lus10033833 [exp]	11.2	0.8754
AT1G79870			D-isomer specific 2-hydroxyaci...		Lus10025796 [exp]	12.7	0.8743
AT1G08700		PS1	Presenilin-1 (.1)		Lus10009518 [exp]	13.0	0.8431

Compare expression of checked genes

Lus10029221 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.