Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29240 117 / 2e-27 Protein of unknown function (DUF688) (.1) AT2G30990 101 / 2e-22 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3) AT2G34170 85 / 4e-17 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2) AT5G45850 70 / 2e-12 Protein of unknown function (DUF688) (.1) AT4G18630 62 / 9e-10 Protein of unknown function (DUF688) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007276 [exp] 872 / 0 AT1G29240 167 / 5e-45 Protein of unknown function (DUF688) (.1) Lus10025403 [exp] 381 / 3e-125 AT4G18630 167 / 9e-45 Protein of unknown function (DUF688) (.1) Lus10015280 [exp] 353 / 2e-113 AT5G45850 170 / 2e-45 Protein of unknown function (DUF688) (.1) Lus10033602 [exp] 97 / 8e-21 AT2G30990 169 / 5e-45 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3) Lus10017644 [exp] 81 / 1e-15 AT2G30990 160 / 9e-42 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3) Lus10020709 [exp] 58 / 1e-08 AT2G30990 130 / 1e-32 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3) Lus10029830 [exp] 52 / 9e-07 AT2G30990 139 / 2e-35 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3) Lus10022661 [exp] 44 / 0.0003 AT3G51760 79 / 6e-17 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3), Protein of unknown function (DUF688) (.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G057800 [exp] 277 / 1e-83 AT1G29240 206 / 1e-57 Protein of unknown function (DUF688) (.1) Potri.011G067000 [exp] 258 / 2e-76 AT1G29240 156 / 2e-40 Protein of unknown function (DUF688) (.1) Potri.014G142800 [exp] 122 / 8e-29 AT2G30990 252 / 8e-75 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3) Potri.016G123700 [exp] 46 / 3e-05 AT3G51760 87 / 7e-20 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3), Protein of unknown function (DUF688) (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05097 [flax] [poplar] DUF688 Protein of unknown function (DUF688)
Representative CDS sequence Show only first row Show all	>Lus10029223 pacid=23139937 polypeptide=Lus10029223 locus=Lus10029223.g ID=Lus10029223.BGIv1.0 annot-version=v1.0 ATGGAGGAAAGAAAGCTGAATCTGAATGCACCACTTCTCTCTGTGAGGAGGTTCTCTTCTCCTATTAGAACTGCAGAAGCCATAAAAGATGGCAAGATAG AGAATTCAAAGCTTGACAGGAGTACCACTCGTAATAAGACAGACTCAAGCTTGGAGCAAGTAACTGAGCCTGTGGCTGTACCTTTCCACTGGGAGCAAAT TCCCGGCAGACGAAAGGATGCTCGTGAGGGGAGTGTGGCAGTGGCTTCTCCAAGGTTTCCTATCAGATGGGTTCCGGGTATTGTGAAGAATCAGGACGAC AAGAGAGGACTCAAAGTTCAGACATCTGTAACACTGCCCAAGCAGAAATCGTCCAGTGCTTTGAAATACAAAGCGACTGCTGCTATTACTAATGCTAATG ATGGTGAAGAAGATGATGAAGAAGAAGAAGATGACGACAAGTACTCTGACGCACTTGAATCATTATCAGGAACCGATTCTTGTTCTATGAAGTGTAGTGT GAGTGGTGAATCATTATCAGGTACAGATTGTGCTGTGGTGGGTAAGCCATCTGGGACGTTTTCCAACGATCCACTGACTCGAGATTTCATGATGAGGCGA TTCTTGCCTGCTGCAAAGGCAATGGCTTTGGAGCAACCTCATTATGCTACTACTGCGAAGAAGCAGCAGCAAATGGTGGTAGAGCCGCCACAATCAATTA GGCAGATTGTAAATATGGCTGCTGCTCGTGGGGATAAGTCTCCTACAGTTAGACGTTGGGAGTCTGCTCTAGTCCCGTACTACCCCAAGGATCTAGAGCC CGATGAAGGAAGTGATCAAGAAGAGGAGGATGATCAGTCTGTGAATTTACCAAGTAAAGCTTGTGGATTCTTCCCACGTTTATGCTTTAAGAATTCAGTT TGCCTGTTGAATCCTGTTCCTGGGATGAAATTAAAAAGCCTGCCTTCTTTGTCTTCTTGCTCCACTCCAAAAACCAAAAAGCCAAGCAAAGCTCCTTCTA GTCGTTCCAGTAGCCCCTTCTCCAGAAAGCTATTTGTTCAGAAGGATGCTTCACGCCCACAAAGCCCATGCCGTGGAGCTCAATCACCAAGGCTAGCCAA TGGTGGATCCGATAGTTTCAATAACGCGCAGGACAGGCAAATGGCTGGAAGAATCTCTCCGTTTAGTAGACGCTCAGGTGGGTTATCACCATACCGAAGT AGCGCACCGCAATCACCTTTCAGATCAGGACCAGTAGGGGTATCTCAAGAAGCTGAAATGTTGAAGGCAAGCAAGCCGTATCTATACTGCAAAGGCGGCA GCAAGTCTCAAGAGCTAACGCCTAGTCTTCATCGCATTAGACAAGGTCCTCCTCCCGCCATTGAGAAGACTCTTCCAAGTCCTGTTCGCGGAGAATCGAA GGCCTTGGTGTGTGTAACTGGAAATGAGTCGCCACTCCCTCTGCCTAAAACACCTTCGGAGTCGTGGCTATGGCGCACCCTGCCTGCGAGGAACTCGTTT GACCGTGCCGCTAGTTTCCAGGGCCAGTGGATGGATTCGAAGAGTAGCAAGTGGGAGACTATGGTGAAATCGTCGTATATGCATCATGATCATGTCCGCT ATTCAGAGGTTAGTAGTCCGCCATTCTTCTCCTGTGATTTTCCAACCAGAGAATTTTCCAGTTTTGACATGATGTTTCTTTTGACAGGAACTGATACCCC AGCATTTGAAAAGCTAGAGAGTTGCAGAACCTGCTACTCGTTGAGACGATTAACTTCATTTGACAGATTGAACGAGATGGGTGAATTCGTCATACAATAA
AA sequence Show only first row Show all	>Lus10029223 pacid=23139937 polypeptide=Lus10029223 locus=Lus10029223.g ID=Lus10029223.BGIv1.0 annot-version=v1.0 MEERKLNLNAPLLSVRRFSSPIRTAEAIKDGKIENSKLDRSTTRNKTDSSLEQVTEPVAVPFHWEQIPGRRKDAREGSVAVASPRFPIRWVPGIVKNQDD KRGLKVQTSVTLPKQKSSSALKYKATAAITNANDGEEDDEEEEDDDKYSDALESLSGTDSCSMKCSVSGESLSGTDCAVVGKPSGTFSNDPLTRDFMMRR FLPAAKAMALEQPHYATTAKKQQQMVVEPPQSIRQIVNMAAARGDKSPTVRRWESALVPYYPKDLEPDEGSDQEEEDDQSVNLPSKACGFFPRLCFKNSV CLLNPVPGMKLKSLPSLSSCSTPKTKKPSKAPSSRSSSPFSRKLFVQKDASRPQSPCRGAQSPRLANGGSDSFNNAQDRQMAGRISPFSRRSGGLSPYRS SAPQSPFRSGPVGVSQEAEMLKASKPYLYCKGGSKSQELTPSLHRIRQGPPPAIEKTLPSPVRGESKALVCVTGNESPLPLPKTPSESWLWRTLPARNSF DRAASFQGQWMDSKSSKWETMVKSSYMHHDHVRYSEVSSPPFFSCDFPTREFSSFDMMFLLTGTDTPAFEKLESCRTCYSLRRLTSFDRLNEMGEFVIQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29240			Protein of unknown function (D...		Lus10029223 [exp]	0	1
AT4G18390	TCP	TCP2	TEOSINTE BRANCHED 1, cycloidea...		Lus10038512 [exp]	3.5	0.8292
					Lus10002303 [exp]	4.2	0.7585
AT2G32350			Ubiquitin-like superfamily pro...		Lus10039679 [exp]	10.7	0.8173
AT3G49950	GRAS		GRAS family transcription fact...		Lus10039709 [exp]	13.0	0.8221
AT3G18010	HD	WOX1	WUSCHEL related homeobox 1 (.1...		Lus10018011 [exp]	17.1	0.8126
AT5G62960			unknown protein		Lus10002386 [exp]	21.9	0.8022
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10010361 [exp]	29.2	0.8060
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013336 [exp]	29.7	0.7976
AT3G44830			Lecithin:cholesterol acyltrans...		Lus10043360 [exp]	31.0	0.7825
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10007208 [exp]	31.4	0.7488

Compare expression of checked genes

Lus10029223 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.