Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45840 430 / 4e-145 Leucine-rich repeat protein kinase family protein (.1.2) AT4G18640 423 / 1e-142 MRH1 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) AT3G56050 328 / 5e-108 Protein kinase family protein (.1.2) AT2G40270 325 / 4e-107 Protein kinase family protein (.1.2) AT5G58540 299 / 6e-99 Protein kinase superfamily protein (.1.2.3) AT5G07150 295 / 1e-94 Leucine-rich repeat protein kinase family protein (.1) AT1G63430 226 / 6e-67 Leucine-rich repeat protein kinase family protein (.1.2) AT5G41180 206 / 1e-59 leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G54590 140 / 5e-37 CRLK1 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) AT1G70460 132 / 4e-33 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007281 [exp] 792 / 0 AT5G45840 568 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10015277 [exp] 478 / 1e-164 AT5G45840 548 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10025400 [exp] 477 / 6e-164 AT5G45840 608 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10031290 [exp] 390 / 6e-130 AT4G18640 457 / 7e-153 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Lus10031860 [exp] 386 / 1e-128 AT5G45840 491 / 4e-166 Leucine-rich repeat protein kinase family protein (.1.2) Lus10017439 [exp] 358 / 2e-117 AT5G45840 457 / 1e-152 Leucine-rich repeat protein kinase family protein (.1.2) Lus10007516 [exp] 357 / 5e-117 AT5G45840 463 / 4e-155 Leucine-rich repeat protein kinase family protein (.1.2) Lus10008486 [exp] 224 / 2e-66 AT1G63430 878 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10001489 [exp] 223 / 8e-66 AT1G63430 879 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G058100 [exp] 483 / 8e-166 AT4G18640 694 / 0.0 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Potri.011G067400 [exp] 472 / 2e-161 AT4G18640 678 / 0.0 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Potri.009G075400 [exp] 395 / 2e-131 AT2G40270 449 / 9e-152 Protein kinase family protein (.1.2) Potri.001G280200 [exp] 391 / 5e-130 AT2G40270 430 / 2e-144 Protein kinase family protein (.1.2) Potri.008G072100 [exp] 374 / 2e-124 AT2G40270 451 / 2e-153 Protein kinase family protein (.1.2) Potri.010G185300 [exp] 355 / 2e-116 AT2G40270 434 / 1e-146 Protein kinase family protein (.1.2) Potri.003G124800 [exp] 223 / 1e-65 AT1G63430 858 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.001G106600 [exp] 221 / 2e-65 AT1G63430 839 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.001G415300 [exp] 144 / 3e-38 AT5G54590 633 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Potri.005G036600 [exp] 137 / 4e-36 AT1G54820 434 / 4e-150 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10029228 pacid=23139815 polypeptide=Lus10029228 locus=Lus10029228.g ID=Lus10029228.BGIv1.0 annot-version=v1.0 ATGAGCAACCTCGCGGCCGAAAATGCTAGTACTGTACAGCTACCATCCACTCAGGGCATCATCATTTTTCCAACCATCACAAGAGGAAGCGGTTCCTTCC TTGCCATACCGAACTCGTCCCATCTAGATCCAGCGTCTTCGCCAACAGATGATACGTTTCGAGGCGATGCCGATGATAGCGTACCAAGTGATAACACTAA TTCGAAAGGTCCGATAAGTCACAACCATATATGGGACACATGGATGTACTTAGTTGTTGCTCTAATGGTGGTTGTGCTGTTAGCTACCATAGTGGTTATG ATGATTATATGTCGCCGTAAAGGACCACTTCGTGGAGTGGAGTCAGTTGGACTTACTAGACAGCTCCAGAGAGCGTTAACTTCAGGGGTTCCTAAGCTAA ACAGAACAGAGTTGGAAACTGCTTGCGAGGATTTCAGCAATATCATATACTCGTACGACGGTGCTACTATGTTCAAGGGGACACTTTCTACCGGAGTTGA AATCGCAGTTATTTTAATCACGATAAATTCTCAAAAAGAGTGGTCGAAGAATGCAGAGAACGCATATCGTAAAAAGATTGATACACTGTCAAGAATCAAC CACAAAAACTTTGTAAATCTCATTGGATTTTGCGAAGAAGATGAACCGTTCAATAGGATGATGGTGTTGGAATACGCTCCAAACGGGACGCTATTCGAAC ATATTCATGTGGAAGGAATGGAACATCTTGATTGGACTTCAAGAGTGAGAATCATCATGGGTGTAGCTTATTGCCTGGAATATATGCATGAATTGACCCC TCCTGTGTCTCACACTAATTTGACTTCACATTCCATCTACTTAACTGACGACTATGCAGCAAAGATTGCAGAAGTCTCCTTTATGTCACAAGCAGCATCA AAAGCAAAACCTGTAAGTGAATACGGAACAGCACATTCCGACCCACCGGTAGTGAGTGAAGATCCTCAGATGAACGTCTACGGCTTCGGTCTGTTACTAC TGGAAATCATATCTGGAAAGCTTCCATACTCAGGAAAACAAGGCCCAATTGAGAAATGGGCGGCTGAATATTTTAGCAAGAGGGACAAACTGGGTGAAAT GGTGGATCAGACGTTGAAGGCCTACAAGAGCAACGAACTGGAGGTGATATGCGAGGTTGCTCAAGAATGTATGATATCGGATCCAAAACAGAGACCGAGT ATGAAGCAGATCGTTCCGAAATTAAGGGAAGTGATTAGCATTAAACCTGATCAAGCAGTGCCGAGGTTGTCTCCGTTGTGGTGGGCTGAACTCGAGATAA TGGAAGCAAGTTGA
AA sequence Show only first row Show all	>Lus10029228 pacid=23139815 polypeptide=Lus10029228 locus=Lus10029228.g ID=Lus10029228.BGIv1.0 annot-version=v1.0 MSNLAAENASTVQLPSTQGIIIFPTITRGSGSFLAIPNSSHLDPASSPTDDTFRGDADDSVPSDNTNSKGPISHNHIWDTWMYLVVALMVVVLLATIVVM MIICRRKGPLRGVESVGLTRQLQRALTSGVPKLNRTELETACEDFSNIIYSYDGATMFKGTLSTGVEIAVILITINSQKEWSKNAENAYRKKIDTLSRIN HKNFVNLIGFCEEDEPFNRMMVLEYAPNGTLFEHIHVEGMEHLDWTSRVRIIMGVAYCLEYMHELTPPVSHTNLTSHSIYLTDDYAAKIAEVSFMSQAAS KAKPVSEYGTAHSDPPVVSEDPQMNVYGFGLLLLEIISGKLPYSGKQGPIEKWAAEYFSKRDKLGEMVDQTLKAYKSNELEVICEVAQECMISDPKQRPS MKQIVPKLREVISIKPDQAVPRLSPLWWAELEIMEAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45840			Leucine-rich repeat protein ki...		Lus10029228 [exp]	0	1
AT1G53000		AtCKS, KDSB	CMP-KDO synthetase, Nucleotide...		Lus10040889 [exp]	4.7	0.8340
AT1G05660			Pectin lyase-like superfamily ...		Lus10010584 [exp]	6.3	0.7860
AT1G69550			disease resistance protein (TI...		Lus10015649 [exp]	6.5	0.7797
					Lus10024501 [exp]	6.9	0.7120
AT1G04670			unknown protein		Lus10002298 [exp]	7.1	0.7999
					Lus10004853 [exp]	8.7	0.7999
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Lus10005194 [exp]	10.0	0.7999
AT5G51030			NAD(P)-binding Rossmann-fold s...		Lus10032524 [exp]	11.2	0.7999
					Lus10032828 [exp]	12.2	0.7999
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Lus10033306 [exp]	13.2	0.7999

Compare expression of checked genes

Lus10029228 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.