Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18650 184 / 5e-58 transcription factor-related (.1) AT3G14880 81 / 2e-18 unknown protein AT1G58330 75 / 3e-16 ZW2 transcription factor-related (.1) AT4G18690 73 / 3e-15 unknown protein AT4G18680 71 / 1e-14 unknown protein AT1G09950 69 / 6e-14 RAS1 RESPONSE TO ABA AND SALT 1 (.1) AT5G45830 62 / 2e-11 ATDOG1, GSQ5, DOG1 GLUCOSE SENSING QTL 5, delay of germination 1 (.1) AT1G08320 49 / 9e-07 bZIP TGA9, bZIP21 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) AT1G77920 41 / 0.0005 bZIP bZIP transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007282 [exp] 386 / 2e-137 AT4G18650 208 / 2e-67 transcription factor-related (.1) Lus10039193 [exp] 91 / 1e-21 AT3G14880 135 / 5e-39 unknown protein Lus10013746 [exp] 82 / 1e-18 AT3G14880 141 / 5e-41 unknown protein Lus10039196 [exp] 82 / 2e-18 AT3G14880 135 / 1e-38 unknown protein Lus10042453 [exp] 79 / 4e-17 AT3G14880 145 / 3e-42 unknown protein Lus10013711 [exp] 78 / 6e-17 AT3G14880 251 / 2e-84 unknown protein Lus10025265 [exp] 68 / 4e-13 AT1G58330 122 / 3e-33 transcription factor-related (.1) Lus10015276 [exp] 67 / 6e-13 AT4G18690 204 / 6e-65 unknown protein Lus10027812 [exp] 64 / 6e-12 AT1G58330 116 / 1e-31 transcription factor-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G058200 [exp] 204 / 1e-65 AT4G18650 226 / 1e-74 transcription factor-related (.1) Potri.007G098800 [exp] 108 / 4e-28 AT3G14880 159 / 6e-48 unknown protein Potri.001G390100 [exp] 74 / 1e-15 AT3G14880 255 / 3e-86 unknown protein Potri.006G058800 [exp] 50 / 4e-07 AT5G06839 540 / 0.0 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Potri.009G164300 [exp] 49 / 1e-06 AT1G08320 574 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Potri.004G203400 [exp] 49 / 1e-06 AT1G08320 571 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Potri.005G170500 [exp] 49 / 2e-06 AT1G77920 468 / 5e-166 bZIP transcription factor family protein (.1) Potri.016G049200 [exp] 49 / 2e-06 AT5G06839 551 / 0.0 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Potri.005G082000 [exp] 46 / 1e-05 AT5G65210 506 / 0.0 bZIP transcription factor family protein (.1.2.3.4.5.6) Potri.007G079900 [exp] 41 / 0.0003 AT5G10030 339 / 5e-117 OCS ELEMENT BINDING FACTOR 4, TGACG motif-binding factor 4 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029229 pacid=23139899 polypeptide=Lus10029229 locus=Lus10029229.g ID=Lus10029229.BGIv1.0 annot-version=v1.0 ATGCCGAAGAGCACCGTCGGTCAGCGGTTCGCCGAGTTCGACGAGACATGGACGAGACAGCTCGAGGCCTACCTACCGCAGCTAGTCACCGCCGCCGCCA ACAAAGACGCGGCGGCGGTGGAGTCTCTGGTGGCCAAGCTGACGCAGCACCACAAGGGATACTACAGCGCGAAATGGGCCTTGGCCCACGAAGATGTCCT CCCTTTCTTCTCCCTACCGTGGGCCTCCCCGCTGGAGAAGGCCTACTCATGGTTCACCGGCTGGAAGCCGTCAACCATGTTCAAGATCATCCACGCCGAA TTTGGCGCCGCCGGAGGATTTCCTTCGAAGCTCGACCACAGCCAGCTGGCGAGTATGGCTCAGCTGCGGCTCAAGGTGAAGCTGGAGGAGGATAAAGTGG AGAGGGACATGGAGAGGCAGCACGTGGCGCTGGCCGACACGAGGATGGTTGAGTTGGCGAGGGTGGCGAGCCGACGTGTTGACGATGACGTGGCGAAGGA GGCGGCTGGCCGCGTGGATGGGCTGGTTGAGGTGGCGCTGAAAGGGATGGCTAATGGGCTGGAGAAGGTGGTCAGGGCGGCGGATTGTGTCAGGCTTAGG ACTTTGAAGGGTATTTTGGAGATTCTGACTCCATTGCAGTCTGTGGCGTTTTTCGCTTCGAGTGCTGCTCTGTTGATTCGGCTAAGGAGGTTTGGGCTTG TGAGGGGTAGGATGGTAAATTCCAAGCAGCTGTAG
AA sequence Show only first row Show all	>Lus10029229 pacid=23139899 polypeptide=Lus10029229 locus=Lus10029229.g ID=Lus10029229.BGIv1.0 annot-version=v1.0 MPKSTVGQRFAEFDETWTRQLEAYLPQLVTAAANKDAAAVESLVAKLTQHHKGYYSAKWALAHEDVLPFFSLPWASPLEKAYSWFTGWKPSTMFKIIHAE FGAAGGFPSKLDHSQLASMAQLRLKVKLEEDKVERDMERQHVALADTRMVELARVASRRVDDDVAKEAAGRVDGLVEVALKGMANGLEKVVRAADCVRLR TLKGILEILTPLQSVAFFASSAALLIRLRRFGLVRGRMVNSKQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18650			transcription factor-related (...		Lus10029229 [exp]	0	1
AT1G69850		NTL1, ATNRT1:2	nitrate transporter 1:2 (.1)		Lus10036710 [exp]	2.0	0.8481
AT5G15780			Pollen Ole e 1 allergen and ex...		Lus10034365 [exp]	6.5	0.7855
AT3G05640			Protein phosphatase 2C family ...		Lus10020671 [exp]	6.9	0.7835
AT2G40330		RCAR9, PYL6	regulatory components of ABA r...		Lus10007275 [exp]	7.3	0.8270
AT2G03350			Protein of unknown function, D...		Lus10030420 [exp]	9.5	0.7667
AT1G69680			Mog1/PsbP/DUF1795-like photosy...		Lus10012837 [exp]	10.4	0.7828
AT5G49120			Protein of unknown function (D...		Lus10006499 [exp]	12.8	0.7866
AT2G33410			RNA-binding (RRM/RBD/RNP motif...		Lus10043124 [exp]	14.2	0.7963
AT4G09820	bHLH	BHLH42, TT8, bH...	TRANSPARENT TESTA 8, basic hel...		Lus10022032 [exp]	14.7	0.7540
AT5G19040		ATIPT5	Arabidopsis thaliana ISOPENTEN...		Lus10004428 [exp]	15.9	0.7860

Compare expression of checked genes

Lus10029229 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.